1WLR

Apo aminopeptidase P from E. coli

1WLR の概要

• エントリーDOI: 10.2210/pdb1wlr/pdb
• 関連するPDBエントリー: 1WL6 1WL9
• 分子名称: Xaa-Pro aminopeptidase, CHLORIDE ION, TETRAETHYLENE GLYCOL, ... (5 entities in total)
• 機能のキーワード: proline-specific peptidase, metalloenzyme, pita-bread fold, hydrolase
• 由来する生物種: Escherichia coli
• 細胞内の位置: Cytoplasm: P15034
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 50093.93

構造登録者

Graham, S.C.,Bond, C.S.,Freeman, H.C.,Guss, J.M. (登録日: 2004-06-29, 公開日: 2005-08-16, 最終更新日: 2024-04-03)

主引用文献

Graham, S.C.,Bond, C.S.,Freeman, H.C.,Guss, J.M.
Structural and functional implications of metal ion selection in aminopeptidase p, a metalloprotease with a dinuclear metal center
Biochemistry, 44:13820-13836, 2005

PubMed Abstract: The effect of metal substitution on the activity and structure of the aminopeptidase P (APPro) from Escherichia coli has been investigated. Measurements of activity in the presence of Mn2+, Mg2+, Zn2+, Na+, and Ca2+ show that significant activity is seen only in the Mn-bound form of the enzyme. The addition of Zn2+ to [MnMn(APPro)] is strongly inhibitory. Crystal structures of [MnMn(APPro)], [MgMg(APPro)], [ZnZn(APPro)], [ZnMg(APPro)], [Ca_(APPro)], [Na_(APPro)], and [apo(APPro)] were determined. The structures of [Ca_(APPro)] and [Na_(APPro)] have a single metal atom at their active site. Surprisingly, when a tripeptide substrate (ValProLeu) was soaked into [Na_(APPro)] crystals in the presence of 200 mM Mg2+, the structure had substrate, but no metal, bound at the active site. The structure of apo APPro complexed with ValProLeu shows that the N-terminal amino group of a substrate can be bound at the active site by carboxylate side chains that normally bind the second metal atom, providing a model for substrate binding in a single-metal active enzyme. Structures of [MnMn(APPro)] and [ZnZn(APPro)] complexes of ProLeu, a product inhibitor, in the presence of excess Zn reveal a third metal-binding site, formed by two conserved His residues and the dipeptide inhibitor. A Zn atom bound at such a site would stabilize product binding and enhance inhibition.

PubMed: 16229471
DOI: 10.1021/bi0512849

実験手法

X-RAY DIFFRACTION (2.1 Å)