1V3W

Structure of Ferripyochelin binding protein from Pyrococcus horikoshii OT3

1V3W の概要

• エントリーDOI: 10.2210/pdb1v3w/pdb
• 分子名称: ferripyochelin binding protein, ZINC ION, CALCIUM ION, ... (7 entities in total)
• 機能のキーワード: beta-helix, carbonic anhydrase, structural genomics, riken structural genomics/proteomics initiative, rsgi, transferase
• 由来する生物種: Pyrococcus horikoshii
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 19484.15

構造登録者

Jeyakanthan, J.,Tahirov, T.H.,RIKEN Structural Genomics/Proteomics Initiative (RSGI) (登録日: 2003-11-07, 公開日: 2003-11-18, 最終更新日: 2023-10-25)

主引用文献

Jeyakanthan, J.,Rangarajan, S.,Mridula, P.,Kanaujia, S.P.,Shiro, Y.,Kuramitsu, S.,Yokoyama, S.,Sekar, K.
Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 64:1012-1019, 2008

PubMed Abstract: Carbonic anhydrases are zinc-containing metalloenzymes that catalyze the interconversion of carbon dioxide and bicarbonate. Three crystal structures of gamma-class carbonic anhydrase (one of which is bound to a bicarbonate molecule) from the aerobic OT3 strain of the hyperthermophilic archeon Pyrococcus horikoshii have been solved by molecular replacement in space group F4(1)32. The asymmetric unit contains a monomer of 173 amino acids and a catalytic Zn2+ ion. The protein fold is a regular prism formed by a left-handed beta-helix, similar to previously reported structures. The active-site Zn2+ ion located at the interface between the two monomers is bound to three histidyl residues and a water molecule in a tetrahedral fashion. In addition to the 20 beta-strands comprising the beta-helix, there is also a long C-terminal alpha-helix. For the first time, Ca2+ ions have been observed in addition to the catalytic Zn2+ ion. It is hypothesized that Tyr159 (which corresponds to the catalytically important Asn202 in previously reported structures) utilizes C-H...pi interactions to fulfill its functions. This study may shed light on the catalytic mechanism of the enzyme and throw open new questions on the mechanism of product removal in carbonic anhydrases.

PubMed: 18931408
DOI: 10.1107/S0907444908024323

実験手法

X-RAY DIFFRACTION (1.5 Å)