1UW8

CRYSTAL STRUCTURE OF OXALATE DECARBOXYLASE

1UW8 の概要

• エントリーDOI: 10.2210/pdb1uw8/pdb
• 関連するPDBエントリー: 1J58 1L3J
• 分子名称: OXALATE DECARBOXYLASE OXDC, MANGANESE (II) ION, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... (4 entities in total)
• 機能のキーワード: metal binding protein, cupin, decarboxylase, oxalate, manganese, formate, lyase
• 由来する生物種: BACILLUS SUBTILIS
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 43852.92

構造登録者

Just, V.J.,Stevenson, C.E.M.,Bowater, L.,Tanner, A.,Lawson, D.M.,Bornemann, S. (登録日: 2004-02-02, 公開日: 2004-02-19, 最終更新日: 2023-12-13)

主引用文献

Just, V.J.,Stevenson, C.E.M.,Bowater, L.,Tanner, A.,Lawson, D.M.,Bornemann, S.
A Closed Conformation of Bacillus Subtilis Oxalate Decarboxylase Oxdc Provides Evidence for the True Identity of the Active Site
J.Biol.Chem., 279:19867-, 2004

PubMed Abstract: Oxalate decarboxylase (EC 4.1.1.2) catalyzes the conversion of oxalate to formate and carbon dioxide and utilizes dioxygen as a cofactor. By contrast, the evolutionarily related oxalate oxidase (EC 1.2.3.4) converts oxalate and dioxygen to carbon dioxide and hydrogen peroxide. Divergent free radical catalytic mechanisms have been proposed for these enzymes that involve the requirement of an active site proton donor in the decarboxylase but not the oxidase reaction. The oxidase possesses only one domain and manganese binding site per subunit, while the decarboxylase has two domains and two manganese sites per subunit. A structure of the decarboxylase together with a limited mutagenesis study has recently been interpreted as evidence that the C-terminal domain manganese binding site (site 2) is the catalytic site and that Glu-333 is the crucial proton donor (Anand, R., Dorrestein, P. C., Kinsland, C., Begley, T. P., and Ealick, S. E. (2002) Biochemistry 41, 7659-7669). The N-terminal binding site (site 1) of this structure is solvent-exposed (open) and lacks a suitable proton donor for the decarboxylase reaction. We report a new structure of the decarboxylase that shows a loop containing a 3(10) helix near site 1 in an alternative conformation. This loop adopts a "closed" conformation forming a lid covering the entrance to site 1. This conformational change brings Glu-162 close to the manganese ion, making it a new candidate for the crucial proton donor. Site-directed mutagenesis of equivalent residues in each domain provides evidence that Glu-162 performs this vital role and that the N-terminal domain is either the sole or the dominant catalytically active domain.

PubMed: 14871895
DOI: 10.1074/JBC.M313820200

実験手法

X-RAY DIFFRACTION (2 Å)