1RKR

CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015

1RKR の概要

• エントリーDOI: 10.2210/pdb1rkr/pdb
• 分子名称: AZURIN-I, COPPER (II) ION (3 entities in total)
• 機能のキーワード: electron transport
• 由来する生物種: Achromobacter xylosoxidans
• 細胞内の位置: Periplasm: P56547
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 55873.55

構造登録者

Li, C.,Inoue, T.,Gotowda, M.,Suzuki, S.,Yamaguchi, K.,Kataoka, K.,Kai, Y. (登録日: 1997-05-17, 公開日: 1998-05-20, 最終更新日: 2024-04-03)

主引用文献

Li, C.,Inoue, T.,Gotowda, M.,Suzuki, S.,Yamaguchi, K.,Kunishige, K.,Kai, Y.
Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54:347-354, 1998

PubMed Abstract: Azurin I from Alcaligenes xylosoxidans NCIMB 11015 (AzN-I) was crystallized by using PEG 4000 as a precipitant. The crystals belong to the monoclinic crystal system and have a space group C2 with the unit-cell parameters of a = 130.67, b = 54.26, c = 74.55 A, and beta = 95.99 degrees. The structure of AzN-I has been solved by the molecular replacement method. Azurin II from the same bacterium (AzN-II) was chosen as the initial structural model. The final crystallographic R value is 17.3% and free R value is 23.6% for 10958 reflections at a resolution of 2.45 A. The root-mean-square deviations for main-chain atoms range between 0.19 and 0.26 A among the four independent molecules in the asymmetric unit. The Cu atom is coordinated to Ndelta of His46 and His117 at 2.0 (1) and 1.9 (1) A, and to Sgamma of Cys112 at 2.2 (1) A, while the carbonyl O atom of Gly45 and Sdelta of Met121 coordinate axially to Cu atom at 2.5 (1) and 3.1 (1) A, respectively. The Cu-N and Cu-S distances of AzN-I are quite similar to those of AzN-II, however, the Cu-SO (Gly45) bond length in AzN-I is 0.25 A shorter than the counterpart in AzN-II. The results have been used to discuss the differences in the spectra of these two proteins.

PubMed: 9761902
DOI: 10.1107/S0907444997010974

実験手法

X-RAY DIFFRACTION (2.45 Å)