1RDC

CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI

1RDC の概要

• エントリーDOI: 10.2210/pdb1rdc/pdb
• 分子名称: RIBONUCLEASE H (2 entities in total)
• 機能のキーワード: hydrolase(endoribonuclease)
• 由来する生物種: Escherichia coli
• 細胞内の位置: Cytoplasm : P0A7Y4
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 17622.01

構造登録者

Katayanagi, K.,Morikawa, K. (登録日: 1993-06-23, 公開日: 1993-10-31, 最終更新日: 2024-02-14)

主引用文献

Katayanagi, K.,Ishikawa, M.,Okumura, M.,Ariyoshi, M.,Kanaya, S.,Kawano, Y.,Suzuki, M.,Tanaka, I.,Morikawa, K.
Crystal structures of ribonuclease HI active site mutants from Escherichia coli.
J.Biol.Chem., 268:22092-22099, 1993

PubMed Abstract: In order to investigate the relationships between the three-dimensional structure and the enzymic activity of E. coli RNase HI, three mutant proteins, which were completely inactivated by the replacements of three functional residues, Asp10 by Asn (D10N), Glu48 by Gln (E48Q), and Asp70 by Asn (D70N), were crystallized. Their three-dimensional structures were determined by x-ray crystallography. Although the entire backbone structures of these mutants were not affected by the replacements, very localized conformational changes were observed around the Mg(2+)-binding site. The substitution of an amide group for a negatively charged carboxyl group in common induces the formation of new hydrogen bond networks, presumably due to the cancellation of repulsive forces between carboxyl side chains with negative charges. These conformational changes can account for the loss of the enzymic activity in the mutants, and suggest a possible role for Mg2+ in the hydrolysis. Since the 3 replaced acidic residues are completely conserved in sequences of reverse transcriptases from retroviruses, including human immunodeficiency virus, the concepts of the catalytic mechanism deduced from this structural analysis can also be applied to RNase H activity in reverse transcriptases.

PubMed: 8408067

実験手法

X-RAY DIFFRACTION (2.3 Å)