1QY1

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Summary for 1QY1

• Entry DOI: 10.2210/pdb1qy1/pdb
• Related: 1qy0 1qy2
• Descriptor: Major Urinary Protein, CADMIUM ION, SODIUM ION, ... (5 entities in total)
• Functional Keywords: lipocalin, beta-barrel, mup1, 2-methoxy-3-isobutylpyrazine, transport protein
• Biological source: Mus musculus (house mouse)
• Cellular location: Secreted: P11588
• Total number of polymer chains: 1
• Total formula weight: 20622.40

Authors

Bingham, R.J.,Findlay, J.B.C.,Hsieh, S.-Y.,Kalverda, A.P.,Kjellberg, A.,Perazzolo, C.,Phillips, S.E.V.,Seshadri, K.,Trinh, C.H.,Turnbull, W.B.,Bodenhausen, G.,Homans, S.W. (deposition date: 2003-09-09, release date: 2004-02-24, Last modification date: 2024-10-30)

Primary citation

Bingham, R.J.,Findlay, J.B.C.,Hsieh, S.-Y.,Kalverda, A.P.,Kjellberg, A.,Perazzolo, C.,Phillips, S.E.V.,Seshadri, K.,Trinh, C.H.,Turnbull, W.B.,Bodenhausen, G.,Homans, S.W.
Thermodynamics of Binding of 2-Methoxy-3-isopropylpyrazine and 2-Methoxy-3-isobutylpyrazine to the Major Urinary Protein.
J.Am.Chem.Soc., 126:1675-1681, 2004

PubMed Abstract: In the present study we examine the thermodynamics of binding of two related pyrazine-derived ligands to the major urinary protein, MUP-I, using a combination of isothermal titration calorimetry (ITC), X-ray crystallography, and NMR backbone (15)N and methyl side-chain (2)H relaxation measurements. Global thermodynamics data derived from ITC indicate that binding is driven by favorable enthalpic contributions, rather than the classical entropy-driven hydrophobic effect. Unfavorable entropic contributions from the protein backbone and side-chain residues in the vicinity of the binding pocket are partially offset by favorable entropic contributions at adjacent positions, suggesting a "conformational relay" mechanism whereby increased rigidity of residues on ligand binding are accompanied by increased conformational freedom of side chains in adjacent positions. The principal driving force governing ligand affinity and specificity can be attributed to solvent-driven enthalpic effects from desolvation of the protein binding pocket.

PubMed: 14871097

Experimental method

X-RAY DIFFRACTION (1.7 Å)