1P1K

Crystal structure of the 1L-myo-inositol 1-phosphate synthase complexed with NADH in the presence of EDTA

1P1K の概要

• エントリーDOI: 10.2210/pdb1p1k/pdb
• 関連するPDBエントリー: 1P1F 1P1H 1P1I 1P1J
• 分子名称: Inositol-3-phosphate synthase, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE (3 entities in total)
• 機能のキーワード: 1l-myo-inositol 1-phosphate, nadh, edta, isomerase, rossmann fold
• 由来する生物種: Saccharomyces cerevisiae (baker's yeast)
• 細胞内の位置: Cytoplasm: P11986
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 120746.41

構造登録者

Jin, X.,Geiger, J.H. (登録日: 2003-04-12, 公開日: 2003-07-08, 最終更新日: 2024-02-14)

主引用文献

Jin, X.,Geiger, J.H.
Structures of NAD(+)- and NADH-bound 1-l-myo-inositol 1-phosphate synthase.
Acta Crystallogr.,Sect.D, 59:1154-1164, 2003

PubMed Abstract: 1-l-myo-Inositol 1-phosphate synthase catalyzes the conversion of d-glucose 6-phosphate to 1-l-myo-inositol 1-phosphate, the first and rate-limiting step in the biosynthesis of all inositol-containing compounds. It involves an oxidation, an intramolecular aldol cyclization and a reduction. Here, the structure of the enzyme in its NAD(+)-bound, NADH-bound and apo forms is presented. These structures confirm that a significant portion of the active site is disordered in the absence of a small molecule, as none of the NAD(+)-bound forms of the enzyme have ordered active sites. On the other hand, the NADH-bound form contains two small molecules in the active site: a phosphate and glycerol. The entire active site is ordered in the presence of these two molecules, completely encapsulating them within the interior cavity. Significant changes in the structure of the active site are also seen, including repositioning of the nicotinamide ring and a motion of a loop region to accommodate the bound phosphate. These changes call into question the mechanism previously proposed for the enzyme. A comparison of the yeast and mycobacterial enzymes shows a surprisingly large change in the relative orientation of the catalytic and Rossmann-fold domains in the two enzymes.

PubMed: 12832758
DOI: 10.1107/S0907444903008205

実験手法

X-RAY DIFFRACTION (2.1 Å)