1N13

The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii

1N13 の概要

• エントリーDOI: 10.2210/pdb1n13/pdb
• 関連するPDBエントリー: 1MT1 1n2m
• 分子名称: Pyruvoyl-dependent arginine decarboxylase beta chain, Pyruvoyl-dependent arginine decarboxylase alpha chain, AGMATINE, ... (5 entities in total)
• 機能のキーワード: pyruvoyl group, pyruvate, arginine decarboxylase, agmatine, arginine, lyase
• 由来する生物種: Methanocaldococcus jannaschii; 詳細
• タンパク質・核酸の鎖数: 12
• 化学式量合計: 108079.74

構造登録者

Tolbert, W.D.,Graham, D.E.,White, R.H.,Ealick, S.E. (登録日: 2002-10-16, 公開日: 2003-03-25, 最終更新日: 2024-10-30)

主引用文献

Tolbert, W.D.,Graham, D.E.,White, R.H.,Ealick, S.E.
Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms
Structure, 11:285-294, 2003

PubMed Abstract: The three-dimensional structure of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii was determined at 1.4 A resolution. The pyruvoyl group of arginine decarboxylase is generated by an autocatalytic internal serinolysis reaction at Ser53 in the proenzyme resulting in two polypeptide chains. The structure of the nonprocessing S53A mutant was also determined. The active site of the processed enzyme unexpectedly contained the reaction product agmatine. The crystal structure confirms that arginine decarboxylase is a homotrimer. The protomer fold is a four-layer alphabetabetaalpha sandwich with topology similar to pyruvoyl-dependent histidine decarboxylase. Highly conserved residues Asn47, Ser52, Ser53, Ile54, and Glu109 are proposed to play roles in the self-processing reaction. Agmatine binding residues include the C terminus of the beta chain (Ser52) from one protomer and the Asp35 side chain and the Gly44 and Val46 carbonyl oxygen atoms from an adjacent protomer. Glu109 is proposed to play a catalytic role in the decarboxylation reaction.

PubMed: 12623016
DOI: 10.1016/S0969-2126(03)00026-1

実験手法

X-RAY DIFFRACTION (1.4 Å)