1LO7

X-ray structure of 4-Hydroxybenzoyl CoA Thioesterase complexed with 4-hydroxyphenacyl CoA

1LO7 の概要

• エントリーDOI: 10.2210/pdb1lo7/pdb
• 関連するPDBエントリー: 1LO8 1LO9
• 分子名称: 4-hydroxybenzoyl-CoA Thioesterase, 4-HYDROXYPHENACYL COENZYME A, 1,2-ETHANEDIOL, ... (4 entities in total)
• 機能のキーワード: thioesterase, hot dog fold, catalytic mechanism, hydrolase
• 由来する生物種: Pseudomonas sp. CBS3
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 17166.25

構造登録者

Thoden, J.B.,Holden, H.M.,Zhuang, Z.,Dunaway-Mariano, D. (登録日: 2002-05-06, 公開日: 2002-05-13, 最終更新日: 2023-08-16)

主引用文献

Thoden, J.B.,Holden, H.M.,Zhuang, Z.,Dunaway-Mariano, D.
X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.
J.Biol.Chem., 277:27468-27476, 2002

PubMed Abstract: The metabolic pathway by which 4-chlorobenzoate is degraded to 4-hydroxybenzoate in the soil-dwelling microbe Pseudomonas sp. strain CBS-3 consists of three enzymes including 4-hydroxybenzoyl-CoA thioesterase. The structure of the unbound form of this thioesterase has been shown to contain the so-called "hot dog" fold with a large helix packed against a five-stranded anti-parallel beta-sheet. To address the manner in which the enzyme accommodates the substrate within the active site, two inhibitors have been synthesized, namely 4-hydroxyphenacyl-CoA and 4-hydroxybenzyl-CoA. Here we describe the structural analyses of the enzyme complexed with these two inhibitors determined and refined to 1.5 and 1.8 A resolution, respectively. These studies indicate that only one protein side chain, Ser(91), participates directly in ligand binding. All of the other interactions between the protein and the inhibitors are mediated through backbone peptidic NH groups, carbonyl oxygens, and/or solvents. The structures of the enzyme-inhibitor complexes suggest that both a hydrogen bond and the positive end of a helix dipole moment serve to polarize the electrons away from the carbonyl carbon of the acyl group, thereby making it more susceptible to nucleophilic attack. Additionally, these studies demonstrate that the carboxylate group of Asp(17) is approximately 3.2 A from the carbonyl carbon of the acyl group. To address the role of Asp(17), the structure of the site-directed mutant protein D17N with bound substrate has also been determined. Taken together, these investigations suggest that the reaction mechanism may proceed through an acyl enzyme intermediate.

PubMed: 11997398
DOI: 10.1074/jbc.M203904200

実験手法

X-RAY DIFFRACTION (1.5 Å)