1KOD

RNA APTAMER COMPLEXED WITH CITRULLINE, NMR

1KOD の概要

• エントリーDOI: 10.2210/pdb1kod/pdb
• 関連するPDBエントリー: 1KOC
• 分子名称: RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*UP*GP*U)-3'), RNA (5'-R(P*AP*CP*GP*GP*UP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3'), CITRULLINE (3 entities in total)
• 機能のキーワード: in vitro selected rna, rna aptamer, rna
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 8265.10

構造登録者

Yang, Y.S.,Kochoyan, M.,Burgstaller, P.,Westhof, E.,Famulok, M. (登録日: 1996-03-28, 公開日: 1996-11-08, 最終更新日: 2023-11-15)

主引用文献

Yang, Y.,Kochoyan, M.,Burgstaller, P.,Westhof, E.,Famulok, M.
Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy.
Science, 272:1343-1347, 1996

PubMed Abstract: In a previous study, an RNA aptamer for the specific recognition of arginine was evolved from a parent sequence that bound citrulline specifically. The two RNAs differ at only 3 positions out of 44. The solution structures of the two aptamers complexed to their cognate amino acids have now been determined by two-dimensional nuclear magnetic resonance spectroscopy. Both aptamers contain two asymmetrical internal loops that are not well ordered in the free RNA but that fold into a compact structure upon ligand binding. Those nucleotides common to both RNAs include a conserved cluster of purine residues, three of which form an uneven plane containing a G:G pair, and two other residues nearly perpendicular to that surface. Two of the three variant nucleotides are stacked on the cluster of purines and form a triple contact to the amino acid side chain, whereas the edge of the third variant nucleotide is capping the binding pocket.

PubMed: 8650546

実験手法

SOLUTION NMR