1K0J

Pseudomonas aeruginosa phbh R220Q in complex with NADPH and free of p-OHB

1K0J の概要

• エントリーDOI: 10.2210/pdb1k0j/pdb
• 関連するPDBエントリー: 1IUW 1K0I
• 分子名称: P-HYDROXYBENZOATE HYDROXYLASE, SULFATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ... (5 entities in total)
• 機能のキーワード: phbh, fad, nadph, hydrolase
• 由来する生物種: Pseudomonas aeruginosa
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 46364.77

構造登録者

Wang, J.,Ortiz-Maldonado, M.,Entsch, B.,Ballou, D.,Gatti, D.L. (登録日: 2001-09-19, 公開日: 2002-02-27, 最終更新日: 2024-02-07)

主引用文献

Wang, J.,Ortiz-Maldonado, M.,Entsch, B.,Massey, V.,Ballou, D.,Gatti, D.L.
Protein and ligand dynamics in 4-hydroxybenzoate hydroxylase.
Proc.Natl.Acad.Sci.USA, 99:608-613, 2002

PubMed Abstract: para-Hydroxybenzoate hydroxylase catalyzes a two-step reaction that demands precise control of solvent access to the catalytic site. The first step of the reaction, reduction of flavin by NADPH, requires access to solvent. The second step, oxygenation of reduced flavin to a flavin C4a-hydroperoxide that transfers the hydroxyl group to the substrate, requires that solvent be excluded to prevent breakdown of the hydroperoxide to oxidized flavin and hydrogen peroxide. These conflicting requirements are met by the coordination of multiple movements involving the protein, the two cofactors, and the substrate. Here, using the R220Q mutant form of para-hydroxybenzoate hydroxylase, we show that in the absence of substrate, the large beta alpha beta domain (residues 1-180) and the smaller sheet domain (residues 180-270) separate slightly, and the flavin swings out to a more exposed position to open an aqueous channel from the solvent to the protein interior. Substrate entry occurs by first binding at a surface site and then sliding into the protein interior. In our study of this mutant, the structure of the complex with pyridine nucleotide was obtained. This cofactor binds in an extended conformation at the enzyme surface in a groove that crosses the binding site of FAD. We postulate that for stereospecific reduction, the flavin swings to an out position and NADPH assumes a folded conformation that brings its nicotinamide moiety into close contact with the isoalloxazine moiety of the flavin. This work clearly shows how complex dynamics can play a central role in catalysis by enzymes.

PubMed: 11805318
DOI: 10.1073/pnas.022640199

実験手法

X-RAY DIFFRACTION (2.2 Å)