1GSJ

Selenomethionine substituted N-acetyl-L-glutamate kinase from Escherichia coli complexed with its substrate n-acetyl-L-glutamate and its substrate analog AMPPNP

1GSJ の概要

• エントリーDOI: 10.2210/pdb1gsj/pdb
• 関連するPDBエントリー: 1GS5 1GSJ
• 分子名称: ACETYLGLUTAMATE KINASE, N-ACETYL-L-GLUTAMATE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... (5 entities in total)
• 機能のキーワード: kinase, acetylglutamate kinase, selenomethionine, carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography
• 由来する生物種: ESCHERICHIA COLI BL21(DE3)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 28281.32

構造登録者

Ramon-Maiques, S.,Marina, A.,Gil-Ortiz, F.,Fita, I.,Rubio, V. (登録日: 2002-01-07, 公開日: 2002-05-16, 最終更新日: 2024-11-13)

主引用文献

Ramon-Maiques, S.,Marina, A.,Gil-Ortiz, F.,Fita, I.,Rubio, V.
Structure of Acetylglutamate Kinase, a Key Enzyme for Arginine Biosynthesis and a Prototype for the Amino Acid Kinase Enzyme Family, During Catalysis
Structure, 10:329-, 2002

PubMed Abstract: N-Acetyl-L-glutamate kinase (NAGK), a member of the amino acid kinase family, catalyzes the second and frequently controlling step of arginine synthesis. The Escherichia coli NAGK crystal structure to 1.5 A resolution reveals a 258-residue subunit homodimer nucleated by a central 16-stranded molecular open beta sheet sandwiched between alpha helices. In each subunit, AMPPNP, as an alphabetagamma-phosphate-Mg2+ complex, binds along the sheet C edge, and N-acetyl-L-glutamate binds near the dyadic axis with its gamma-COO- aligned at short distance from the gamma-phosphoryl, indicating associative phosphoryl transfer assisted by: (1) Mg2+ complexation; (2) the positive charges on Lys8, Lys217, and on two helix dipoles; and (3) by hydrogen bonding with the y-phosphate. The structural resemblance with carbamate kinase and the alignment of the sequences suggest that NAGK is a structural and functional prototype for the amino acid kinase family, which differs from other acylphosphate-making devices represented by phosphoglycerate kinase, acetate kinase, and biotin carboxylase.

PubMed: 12005432
DOI: 10.1016/S0969-2126(02)00721-9

実験手法

X-RAY DIFFRACTION (1.85 Å)