1FYJ

SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS).

1FYJ の概要

• エントリーDOI: 10.2210/pdb1fyj/pdb
• NMR情報: BMRB: 4634
• 分子名称: MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (1 entity in total)
• 機能のキーワード: helix-turn-helix, ligase
• 由来する生物種: Homo sapiens (human)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 6337.26

構造登録者

Jeong, E.-J.,Hwang, G.-S.,Kim, K.H.,Kim, M.J.,Kim, S.,Kim, K.-S. (登録日: 2000-10-02, 公開日: 2001-03-14, 最終更新日: 2024-05-29)

主引用文献

Jeong, E.J.,Hwang, G.S.,Kim, K.H.,Kim, M.J.,Kim, S.,Kim, K.S.
Structural analysis of multifunctional peptide motifs in human bifunctional tRNA synthetase: identification of RNA-binding residues and functional implications for tandem repeats.
Biochemistry, 39:15775-15782, 2000

PubMed Abstract: Human bifunctional glutamyl-prolyl-tRNA synthetase (EPRS) contains three tandem repeats linking the two catalytic domains. These repeated motifs have been shown to be involved in protein-protein and protein-nucleic acid interactions. The single copy of the homologous motifs has also been found in several different aminoacyl-tRNA synthetases. The solution structure of repeat 1 (EPRS-R1) and the secondary structure of the whole appended domain containing three repeated motifs in EPRS (EPRS-R123) was determined by nuclear magnetic resonance (NMR) spectroscopy. EPRS-R1 consists of two helices (residues 679-699 and 702-721) arranged in a helix-turn-helix, which is similar to other RNA binding proteins and the j-domain of DnaJ, and EPRS-R123 is composed of three helix-turn-helix motifs linked by an unstructured loop. When tRNA is bound to the appended domain, chemical shifts of several residues in each repeat are perturbed. However, the perturbed residues in each repeat are not the same although they are in the same binding surface, suggesting that each repeat in the appended domain is dynamically arranged to maximize contacts with tRNA. The affinity of tRNA to the three-repeated motif was much higher than to the single motif. These results indicate that each of the repeated motifs has a weak intrinsic affinity for tRNA, but the repetition of the motifs may be required to enhance binding affinity. Thus, the results of this work gave information on the RNA-binding mode of the multifunctional peptide motif attached to different ARSs and the functional reason for the repetition of this motif.

PubMed: 11123902
DOI: 10.1021/bi001393h

実験手法

SOLUTION NMR