1E9Z

Crystal structure of Helicobacter pylori urease

Summary for 1E9Z

• Entry DOI: 10.2210/pdb1e9z/pdb
• Related: 1E9Y
• Descriptor: UREASE SUBUNIT ALPHA, UREASE SUBUNIT BETA, NICKEL (II) ION, ... (4 entities in total)
• Functional Keywords: hydrolase
• Biological source: HELICOBACTER PYLORI; More
• Cellular location: Cytoplasm : P14916 P69996
• Total number of polymer chains: 2
• Total formula weight: 88434.47

Authors

Ha, N.-C.,Oh, S.-T.,Oh, B.-H. (deposition date: 2000-11-01, release date: 2001-11-01, Last modification date: 2023-12-13)

Primary citation

Ha, N.-C.,Oh, S.-T.,Sung, J.Y.,Cha, K.-A.,Hyung Lee, M.,Oh, B.-H.
Supramolecular Assembly and Acid Resistance of Helicobacter Pylori Urease
Nat.Struct.Biol., 8:480-, 2001

PubMed Abstract: Helicobacter pylori, an etiologic agent in a variety of gastroduodenal diseases, produces a large amount of urease, which is believed to neutralize gastric acid by producing ammonia for the survival of the bacteria. Up to 30% of the enzyme associates with the surface of intact cells upon lysis of neighboring bacteria. The role of the enzyme at the extracellular location has been a subject of controversy because the purified enzyme is irreversibly inactivated below pH 5. We have determined the crystal structure of H. pylori urease, which has a 1.1 MDa spherical assembly of 12 catalytic units with an outer diameter of approximately 160 A. Under physiologically relevant conditions, the activity of the enzyme remains unaffected down to pH 3. Activity assays under different conditions indicated that the cluster of the 12 active sites on the supramolecular assembly may be critical for the survival of the enzyme at low pH. The structure provides a novel example of a molecular assembly adapted for acid resistance that, together with the low Km value of the enzyme, is likely to enable the organism to inhabit the hostile niche.

PubMed: 11373617
DOI: 10.1038/88563

Experimental method

X-RAY DIFFRACTION (3 Å)