1E03

PLASMA ALPHA ANTITHROMBIN-III AND PENTASACCHARIDE

1E03 の概要

• エントリーDOI: 10.2210/pdb1e03/pdb
• 関連するPDBエントリー: 1ANT 1ATH 1BR8 1DZG 1DZH 1E04 1E05 2ANT
• 関連するBIRD辞書のPRD_ID: PRD_900031
• 分子名称: ANTITHROMBIN-III, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (6 entities in total)
• 機能のキーワード: blood clotting, serpin
• 由来する生物種: HOMO SAPIENS (HUMAN)
• 細胞内の位置: Secreted, extracellular space: P01008
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 104151.30

構造登録者

McCoy, A.J.,Jin, L.,Abrahams, J.-P.,Skinner, R.,Carrell, R.W. (登録日: 2000-03-09, 公開日: 2000-06-02, 最終更新日: 2023-12-06)

主引用文献

Mccoy, A.J.,Pei, X.Y.,Skinner, R.,Abrahams, J.-P.,Carrell, R.W.
Structure of Beta-Antithrombin and the Effect of Glycosylation on Antithrombin'S Heparin Affinity and Activity.
J.Mol.Biol., 326:823-, 2003

PubMed Abstract: Antithrombin is a member of the serpin family of protease inhibitors and the major inhibitor of the blood coagulation cascade. It is unique amongst the serpins in that it circulates in a conformation that is inactive against its target proteases. Activation of antithrombin is brought about by a conformational change initiated upon binding heparin or heparan sulphate. Two isoforms exist in the circulation, alpha-antithrombin and beta-antithrombin, which differ in the amount of glycosylation present on the polypeptide chain; beta-antithrombin lacks the carbohydrate present at Asn135 in alpha-antithrombin. Of the two forms, beta-antithrombin has the higher affinity for heparin and thus functions as the major inhibitor in vivo even though it is the less abundant form. The reason for the differences in heparin affinity between the alpha and beta-forms have been shown to be due to the additional carbohydrate changing the rate of the conformational change. Here, we describe the most accurate structures of alpha-antithrombin and alpha-antithrombin+heparin pentasaccharide reported to date (2.6A and 2.9A resolution, respectively, both re-refinements using old data), and the structure of beta-antithrombin (2.6A resolution). The new structures have a remarkable degree of ordered carbohydrate and include parts of the antithrombin chain not modeled before. The structures have allowed a detailed comparison of the conformational differences between the three. They show that the structural basis of the lower affinity for heparin of alpha-antithrombin over beta-antithrombin is due to the conformational change that occurs upon heparin binding being sterically hindered by the presence of the additional bulky carbohydrate at Asn135.

PubMed: 12581643
DOI: 10.1016/S0022-2836(02)01382-7

実験手法

X-RAY DIFFRACTION (2.9 Å)