1DQ4

A transient unlocked concanavalin A structure with MN2+ bound in the transition metal ion binding site S1 and an empty calcium binding site S2

Summary for 1DQ4

• Entry DOI: 10.2210/pdb1dq4/pdb
• Related: 1DQ0 1DQ1 1DQ2 1DQ5 1DQ6
• Descriptor: Concanavalin-Br, MANGANESE (II) ION (3 entities in total)
• Functional Keywords: concanavalin a, lectin, metal binding, transient, transition metal, manganese, sugar binding protein
• Biological source: Canavalia ensiformis (jack bean)
• Total number of polymer chains: 2
• Total formula weight: 51464.52

Authors

Bouckaert, J.,Dewallef, Y.,Poortmans, F.,Wyns, L.,Loris, R. (deposition date: 1999-12-30, release date: 2000-01-19, Last modification date: 2024-02-07)

Primary citation

Bouckaert, J.,Dewallef, Y.,Poortmans, F.,Wyns, L.,Loris, R.
The structural features of concanavalin A governing non-proline peptide isomerization
J.Biol.Chem., 275:19778-19787, 2000

PubMed Abstract: The reversible binding of manganese and calcium to concanavalin A determines the carbohydrate binding of the lectin by inducing large conformational changes. These changes are governed by the isomerization of a non-proline peptide bond, Ala-207-Asp-208, positioned in a beta-strand in between the calcium binding site S2 and the carbohydrate specificity-determining loop. The replacement of calcium by manganese allowed us to investigate the structures of the carbohydrate binding, locked state and the inactive, unlocked state of concanavalin A, both with and without metal ions bound. Crystals of unlocked metal-free concanavalin A convert to the locked form with the binding of two Mn(2+) ions. Removal of these ions from the crystals traps metal-free concanavalin A in its locked state, a minority species in solution. The ligation of a metal ion in S2 to unlocked concanavalin A causes bending of the beta-strand foregoing the S2 ligand residues Asp-10 and Tyr-12. This bending disrupts conventional beta-sheet hydrogen bonding and forces the Thr-11 side chain against the Ala-207-Asp-208 peptide bond. The steric strain exerted by Thr-11 is presumed to drive the trans-to-cis isomerization. Upon isomerization, Asp-208 flips into its carbohydrate binding position, and the conformation of the carbohydrate specificity determining loop changes dramatically.

PubMed: 10748006
DOI: 10.1074/jbc.M001251200

Experimental method

X-RAY DIFFRACTION (2.9 Å)