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6DHE

RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution

これはPDB形式変換不可エントリーです。
エンティティ
Entity ID鎖名説明種類鎖長化学式量分子数データベース名(アクセス番号)由来する生物種エンティティの一般名
1A, aPhotosystem II protein D1 1polymer33437059.32UniProt (P0A444)
Pfam (PF00124)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII D1 protein 1,Photosystem II Q(B) protein 1
2B, bPhotosystem II CP47 reaction center proteinpolymer50556096.82UniProt (Q8DIQ1)
Pfam (PF00421)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII 47 kDa protein,Protein CP-47
3C, cPhotosystem II CP43 reaction center proteinpolymer45149207.32UniProt (Q8DIF8)
Pfam (PF00421)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII 43 kDa protein,Protein CP-43
4D, dPhotosystem II D2 proteinpolymer34138275.82UniProt (Q8CM25)
Pfam (PF00124)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII D2 protein,Photosystem II Q(A) protein
5E, eCytochrome b559 subunit alphapolymer829378.62UniProt (Q8DIP0)
Pfam (PF00283)
Pfam (PF00284)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII reaction center subunit V
6F, fCytochrome b559 subunit betapolymer343868.62UniProt (Q8DIN9)
Pfam (PF00283)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII reaction center subunit VI
7H, hPhotosystem II reaction center protein Hpolymer657227.62UniProt (Q8DJ43)
Pfam (PF00737)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-H
8I, iPhotosystem II reaction center protein Ipolymer364196.02UniProt (Q8DJZ6)
Pfam (PF02532)
In PDB
Thermosynechococcus elongatusPSII-I,PSII 4.4 kDa protein
9J, jPhotosystem II reaction center protein Jpolymer363627.32UniProt (P59087)
Pfam (PF01788)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-J
10K, kPhotosystem II reaction center protein Kpolymer374101.92UniProt (Q9F1K9)
Pfam (PF02533)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-K
11L, lPhotosystem II reaction center protein Lpolymer374299.02UniProt (Q8DIN8)
Pfam (PF02419)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-L
12M, mPhotosystem II reaction center protein Mpolymer333706.32UniProt (Q8DHA7)
Pfam (PF05151)
In PDB
Thermosynechococcus elongatusPSII-M
13O, oPhotosystem II manganese-stabilizing polypeptidepolymer24426651.72UniProt (P0A431)
Pfam (PF01716)
In PDB
Thermosynechococcus elongatus (strain BP-1)MSP
14T, tPhotosystem II reaction center protein Tpolymer303648.42UniProt (Q8DIQ0)
Pfam (PF01405)
In PDB
Thermosynechococcus elongatusPSII-Tc
15U, uPhotosystem II 12 kDa extrinsic proteinpolymer9710966.32UniProt (Q9F1L5)
Pfam (PF06514)
In PDB
Thermosynechococcus elongatus (strain BP-1)PS II complex 12 kDa extrinsic protein,PSII-U
16V, vCytochrome c-550polymer13715148.32UniProt (P0A386)
Pfam (PF14495)
In PDB
Thermosynechococcus elongatus (strain BP-1)Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c
17Y, yPhotosystem II reaction center protein Ycf12polymer303228.02UniProt (Q8DJI1)
Pfam (PF05969)
In PDB
Thermosynechococcus elongatus (strain BP-1)
18X, xPhotosystem II reaction center X proteinpolymer383990.82UniProt (Q9F1R6)
Pfam (PF06596)
In PDB
Thermosynechococcus elongatus (strain BP-1)
19Z, zPhotosystem II reaction center protein Zpolymer626766.22UniProt (Q8DHJ2)
Pfam (PF01737)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-Z
20R, rPhotosystem II protein Ypolymer343859.72UniProt (Q8DKM3)
Pfam (PF06298)
In PDB
Thermosynechococcus elongatus (strain BP-1)
21a, AFE (II) IONnon-polymer55.82Chemie (FE2)
22a, ACHLORIDE IONnon-polymer35.54Chemie (CL)
23b, c, B, D, C...CHLOROPHYLL Anon-polymer893.570Chemie (CLA)
24D, a, d, APHEOPHYTIN Anon-polymer871.24Chemie (PHO)
25D, c, k, b, t...(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotenenon-polymer536.912Chemie (8CT)
26D, a, A, d2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.24Chemie (PL9)
27d, D, c, b, B...1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.213Chemie (LMG)
28A, B, f, D, a...1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.18Chemie (SQD)
29A, h, c, o, H...DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.310Chemie (DGD)
30A, aCA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
31Y, h, c, b, a...BETA-CAROTENEnon-polymer536.910Chemie (BCR)
32C, T, B, d, X...UNKNOWN LIGANDnon-polymer723.031Chemie (UNL)
33e, D, l, E, L...1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.010Chemie (LHG)PSII-Z
34D, aBICARBONATE IONnon-polymer61.02Chemie (BCT)
35e, FPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.52Chemie (HEM)
36V, vHEME Cnon-polymer618.52Chemie (HEC)
37waterwater18.02021Chemie (HOH)
配列ビューア
非対称単位の内容
タンパク質・
核酸鎖
鎖の数40
化学式量合計590607.7
タンパク質・
核酸・
糖鎖以外*
分子数186
化学式量合計140091.0
全て*化学式量合計730698.7
*水分子は含んでいません

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件を2024-09-18に公開中

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