6DHE
RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution
これはPDB形式変換不可エントリーです。
エンティティ
| Entity ID | 鎖名 | 説明 | 種類 | 鎖長 | 化学式量 | 分子数 | データベース名(アクセス番号) | 由来する生物種 | エンティティの一般名 |
| 1 | A, a | Photosystem II protein D1 1 | polymer | 334 | 37059.3 | 2 | UniProt (P0A444) Pfam (PF00124) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII D1 protein 1,Photosystem II Q(B) protein 1 |
| 2 | B, b | Photosystem II CP47 reaction center protein | polymer | 505 | 56096.8 | 2 | UniProt (Q8DIQ1) Pfam (PF00421) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII 47 kDa protein,Protein CP-47 |
| 3 | C, c | Photosystem II CP43 reaction center protein | polymer | 451 | 49207.3 | 2 | UniProt (Q8DIF8) Pfam (PF00421) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII 43 kDa protein,Protein CP-43 |
| 4 | D, d | Photosystem II D2 protein | polymer | 341 | 38275.8 | 2 | UniProt (Q8CM25) Pfam (PF00124) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII D2 protein,Photosystem II Q(A) protein |
| 5 | E, e | Cytochrome b559 subunit alpha | polymer | 82 | 9378.6 | 2 | UniProt (Q8DIP0) Pfam (PF00283) Pfam (PF00284) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII reaction center subunit V |
| 6 | F, f | Cytochrome b559 subunit beta | polymer | 34 | 3868.6 | 2 | UniProt (Q8DIN9) Pfam (PF00283) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII reaction center subunit VI |
| 7 | H, h | Photosystem II reaction center protein H | polymer | 65 | 7227.6 | 2 | UniProt (Q8DJ43) Pfam (PF00737) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII-H |
| 8 | I, i | Photosystem II reaction center protein I | polymer | 36 | 4196.0 | 2 | UniProt (Q8DJZ6) Pfam (PF02532) In PDB | Thermosynechococcus elongatus | PSII-I,PSII 4.4 kDa protein |
| 9 | J, j | Photosystem II reaction center protein J | polymer | 36 | 3627.3 | 2 | UniProt (P59087) Pfam (PF01788) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII-J |
| 10 | K, k | Photosystem II reaction center protein K | polymer | 37 | 4101.9 | 2 | UniProt (Q9F1K9) Pfam (PF02533) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII-K |
| 11 | L, l | Photosystem II reaction center protein L | polymer | 37 | 4299.0 | 2 | UniProt (Q8DIN8) Pfam (PF02419) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII-L |
| 12 | M, m | Photosystem II reaction center protein M | polymer | 33 | 3706.3 | 2 | UniProt (Q8DHA7) Pfam (PF05151) In PDB | Thermosynechococcus elongatus | PSII-M |
| 13 | O, o | Photosystem II manganese-stabilizing polypeptide | polymer | 244 | 26651.7 | 2 | UniProt (P0A431) Pfam (PF01716) In PDB | Thermosynechococcus elongatus (strain BP-1) | MSP |
| 14 | T, t | Photosystem II reaction center protein T | polymer | 30 | 3648.4 | 2 | UniProt (Q8DIQ0) Pfam (PF01405) In PDB | Thermosynechococcus elongatus | PSII-Tc |
| 15 | U, u | Photosystem II 12 kDa extrinsic protein | polymer | 97 | 10966.3 | 2 | UniProt (Q9F1L5) Pfam (PF06514) In PDB | Thermosynechococcus elongatus (strain BP-1) | PS II complex 12 kDa extrinsic protein,PSII-U |
| 16 | V, v | Cytochrome c-550 | polymer | 137 | 15148.3 | 2 | UniProt (P0A386) Pfam (PF14495) In PDB | Thermosynechococcus elongatus (strain BP-1) | Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c |
| 17 | Y, y | Photosystem II reaction center protein Ycf12 | polymer | 30 | 3228.0 | 2 | UniProt (Q8DJI1) Pfam (PF05969) In PDB | Thermosynechococcus elongatus (strain BP-1) | |
| 18 | X, x | Photosystem II reaction center X protein | polymer | 38 | 3990.8 | 2 | UniProt (Q9F1R6) Pfam (PF06596) In PDB | Thermosynechococcus elongatus (strain BP-1) | |
| 19 | Z, z | Photosystem II reaction center protein Z | polymer | 62 | 6766.2 | 2 | UniProt (Q8DHJ2) Pfam (PF01737) In PDB | Thermosynechococcus elongatus (strain BP-1) | PSII-Z |
| 20 | R, r | Photosystem II protein Y | polymer | 34 | 3859.7 | 2 | UniProt (Q8DKM3) Pfam (PF06298) In PDB | Thermosynechococcus elongatus (strain BP-1) | |
| 21 | a, A | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
| 22 | a, A | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
| 23 | b, c, B, D, C... | CHLOROPHYLL A | non-polymer | 893.5 | 70 | Chemie (CLA) | |||
| 24 | D, a, d, A | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 25 | D, c, k, b, t... | (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene | non-polymer | 536.9 | 12 | Chemie (8CT) | |||
| 26 | D, a, A, d | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 27 | d, D, c, b, B... | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 13 | Chemie (LMG) | |||
| 28 | A, B, f, D, a... | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
| 29 | A, h, c, o, H... | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) | |||
| 30 | A, a | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 31 | Y, h, c, b, a... | BETA-CAROTENE | non-polymer | 536.9 | 10 | Chemie (BCR) | |||
| 32 | C, T, B, d, X... | UNKNOWN LIGAND | non-polymer | 723.0 | 31 | Chemie (UNL) | |||
| 33 | e, D, l, E, L... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 10 | Chemie (LHG) | PSII-Z | ||
| 34 | D, a | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
| 35 | e, F | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 36 | V, v | HEME C | non-polymer | 618.5 | 2 | Chemie (HEC) | |||
| 37 | water | water | 18.0 | 2021 | Chemie (HOH) |
配列ビューア
非対称単位の内容
| タンパク質・ 核酸鎖 | 鎖の数 | 40 |
| 化学式量合計 | 590607.7 | |
| タンパク質・ 核酸・ 糖鎖以外* | 分子数 | 186 |
| 化学式量合計 | 140091.0 | |
| 全て* | 化学式量合計 | 730698.7 |
