4B3S

Crystal structure of the 30S ribosome in complex with compound 37

エンティティ

Entity ID	鎖名	説明	種類	鎖長	化学式量	分子数	データベース名(アクセス番号)	由来する生物種	エンティティの一般名
1	A	16S RIBOSOMAL RNA	polymer	1521	493652.2	1	GenBank (55771382)	THERMUS THERMOPHILUS HB8
2	B	30S RIBOSOMAL PROTEIN S2	polymer	256	29317.7	1	UniProt (P80371) Pfam (PF00318) In PDB	THERMUS THERMOPHILUS HB8
3	C	30S RIBOSOMAL PROTEIN S3	polymer	239	26751.1	1	UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB	THERMUS THERMOPHILUS HB8
4	D	30S RIBOSOMAL PROTEIN S4	polymer	208	24242.3	1	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	THERMUS THERMOPHILUS HB8
5	E	30S RIBOSOMAL PROTEIN S5	polymer	161	17452.2	1	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB	THERMUS THERMOPHILUS HB8
6	F	30S RIBOSOMAL PROTEIN S6	polymer	101	11988.8	1	UniProt (Q5SLP8) Pfam (PF01250) In PDB	THERMUS THERMOPHILUS HB8	TS9
7	G	30S RIBOSOMAL PROTEIN S7	polymer	155	17919.8	1	UniProt (P17291) Pfam (PF00177) In PDB	THERMUS THERMOPHILUS HB8
8	H	30S RIBOSOMAL PROTEIN S8	polymer	138	15868.6	1	UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB	THERMUS THERMOPHILUS HB8
9	I	30S RIBOSOMAL PROTEIN S9	polymer	128	14429.7	1	UniProt (P80374) Pfam (PF00380) In PDB	THERMUS THERMOPHILUS HB8
10	J	30S RIBOSOMAL PROTEIN S10	polymer	104	11823.8	1	UniProt (Q5SHN7) Pfam (PF00338) In PDB	THERMUS THERMOPHILUS HB8
11	K	30S RIBOSOMAL PROTEIN S11	polymer	129	13737.9	1	UniProt (P80376) Pfam (PF00411) In PDB	THERMUS THERMOPHILUS HB8
12	L	30S RIBOSOMAL PROTEIN S12	polymer	132	14637.4	1	UniProt (Q5SHN3) Pfam (PF00164) In PDB	THERMUS THERMOPHILUS HB8
13	M	30S RIBOSOMAL PROTEIN S13	polymer	126	14338.9	1	UniProt (P80377) Pfam (PF00416) In PDB	THERMUS THERMOPHILUS HB8
14	N	30S RIBOSOMAL PROTEIN S14 TYPE Z	polymer	60	7027.5	1	UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB	THERMUS THERMOPHILUS HB8
15	O	30S RIBOSOMAL PROTEIN S15	polymer	88	10447.2	1	UniProt (Q5SJ76) Pfam (PF00312) In PDB	THERMUS THERMOPHILUS HB8
16	P	30S RIBOSOMAL PROTEIN S16	polymer	88	10410.0	1	UniProt (Q5SJH3) Pfam (PF00886) In PDB	THERMUS THERMOPHILUS HB8
17	Q	30S RIBOSOMAL PROTEIN S17	polymer	104	12193.5	1	UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB	THERMUS THERMOPHILUS HB8
18	R	30S RIBOSOMAL PROTEIN S18	polymer	88	10244.3	1	UniProt (Q5SLQ0) Pfam (PF01084) In PDB	THERMUS THERMOPHILUS HB8
19	S	30S RIBOSOMAL PROTEIN S19	polymer	92	10474.3	1	UniProt (Q5SHP2) Pfam (PF00203) In PDB	THERMUS THERMOPHILUS HB8
20	T	30S RIBOSOMAL PROTEIN S20	polymer	106	11722.1	1	UniProt (P80380) Pfam (PF01649) In PDB	THERMUS THERMOPHILUS HB8
21	V	30S RIBOSOMAL PROTEIN THX	polymer	26	3218.8	1	UniProt (Q5SIH3) Pfam (PF17070) In PDB	THERMUS THERMOPHILUS HB8
22	W	5'-R(*UP*UP*CP*AP*AP*AP)-3'	polymer	6	1860.2	1		THERMUS THERMOPHILUS HB8	MRNA
23	Z	5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3'	polymer	16	5161.1	1		THERMUS THERMOPHILUS HB8	ANTICODON STEM LOOP ASL
24	A, B, E, F, H...	MAGNESIUM ION	non-polymer		24.3	166	Chemie (MG)
25	A	POTASSIUM ION	non-polymer		39.1	13	Chemie (K)
26	A	(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-4-O-benzyl-2-deoxy-alpha-D-glucopyranoside	non-polymer		705.8	1	Chemie (RPO)
27	D, N	ZINC ION	non-polymer		65.4	2	Chemie (ZN)

配列変更

I: 0 - 127 (UniProt: P80374)

PDB	外部データベース	詳細
Arg 57	His 58	conflict

Q: 1 - 104 (UniProt: Q5SHP7)

PDB	外部データベース	詳細
Gln 95	Glu 96	conflict

R: -14 - 73 (UniProt: Q5SLQ0)

PDB	外部データベース	詳細
Gly 45	Ala 60	conflict

T: -6 - 99 (UniProt: P80380)

PDB	外部データベース	詳細
Val 34	Ile 41	conflict

非対称単位の内容

タンパク質・ 核酸鎖	鎖の数	23
	化学式量合計	788919.1
タンパク質・ 核酸・ 糖鎖以外*	分子数	182
	化学式量合計	5379.5
全て*	化学式量合計	794298.5

*水分子は含んでいません