6AAZ
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pNO2ZLys
GO(遺伝子オントロジー)由来の情報
鎖名 | GO(遺伝子オントロジー)id | 名前空間 | 内容 |
A | 0000049 | molecular_function | tRNA binding |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0043039 | biological_process | tRNA aminoacylation |
PDBデータベースに由来する情報
site_id | AC1 |
残基数 | 5 |
詳細 | binding site for residue MG A 501 |
鎖名 | 残基 |
A | ATP504 |
A | HOH696 |
A | HOH699 |
A | HOH739 |
A | HOH784 |
site_id | AC2 |
残基数 | 6 |
詳細 | binding site for residue MG A 502 |
鎖名 | 残基 |
A | HOH713 |
A | HOH749 |
A | GLU396 |
A | SER399 |
A | MG503 |
A | ATP504 |
site_id | AC3 |
残基数 | 6 |
詳細 | binding site for residue MG A 503 |
鎖名 | 残基 |
A | GLU396 |
A | MG502 |
A | ATP504 |
A | HOH710 |
A | HOH713 |
A | HOH783 |
site_id | AC4 |
残基数 | 25 |
詳細 | binding site for residue ATP A 504 |
鎖名 | 残基 |
A | ARG330 |
A | GLU332 |
A | HIS338 |
A | LEU339 |
A | PHE342 |
A | MET344 |
A | GLU396 |
A | LEU397 |
A | SER398 |
A | SER399 |
A | GLY421 |
A | GLY423 |
A | ARG426 |
A | MG501 |
A | MG502 |
A | MG503 |
A | 9UC505 |
A | HOH687 |
A | HOH699 |
A | HOH713 |
A | HOH739 |
A | HOH749 |
A | HOH753 |
A | HOH783 |
A | HOH784 |
site_id | AC5 |
残基数 | 13 |
詳細 | binding site for residue 9UC A 505 |
鎖名 | 残基 |
A | MET276 |
A | ALA302 |
A | ALA306 |
A | LEU309 |
A | ASN346 |
A | CYS348 |
A | PHE384 |
A | SER399 |
A | LEU407 |
A | ASP408 |
A | TRP411 |
A | GLY419 |
A | ATP504 |
site_id | AC6 |
残基数 | 10 |
詳細 | binding site for residue CIT A 506 |
鎖名 | 残基 |
A | ARG310 |
A | LYS311 |
A | ARG314 |
A | ASN453 |
A | HOH602 |
A | HOH620 |
A | HOH622 |
A | HOH747 |
A | HOH757 |
A | HOH772 |
site_id | AC7 |
残基数 | 3 |
詳細 | binding site for residue K A 507 |
鎖名 | 残基 |
A | GLU341 |
A | ARG442 |
A | HOH761 |
site_id | AC8 |
残基数 | 4 |
詳細 | binding site for residue K A 508 |
鎖名 | 残基 |
A | ARG217 |
A | GLU218 |
A | ASP313 |
A | ARG314 |
site_id | AC9 |
残基数 | 3 |
詳細 | binding site for residue K A 509 |
鎖名 | 残基 |
A | ASP433 |
A | LYS435 |
A | HOH792 |