3ANM
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with 5-phenylpyridin-2-ylmethylphosphonic acid
GO(遺伝子オントロジー)由来の情報
鎖名 | GO(遺伝子オントロジー)id | 名前空間 | 内容 |
A | 0008299 | biological_process | isoprenoid biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0019288 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
A | 0030145 | molecular_function | manganese ion binding |
A | 0030604 | molecular_function | 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity |
A | 0042802 | molecular_function | identical protein binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0051484 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process |
A | 0070402 | molecular_function | NADPH binding |
A | 1990065 | cellular_component | Dxr protein complex |
B | 0008299 | biological_process | isoprenoid biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0019288 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
B | 0030145 | molecular_function | manganese ion binding |
B | 0030604 | molecular_function | 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity |
B | 0042802 | molecular_function | identical protein binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0051484 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process |
B | 0070402 | molecular_function | NADPH binding |
B | 1990065 | cellular_component | Dxr protein complex |
PDBデータベースに由来する情報
site_id | AC1 |
残基数 | 13 |
詳細 | BINDING SITE FOR RESIDUE SYD A 800 |
鎖名 | 残基 |
A | GLY184 |
A | HOH415 |
A | HOH419 |
A | HOH451 |
A | HOH463 |
A | SER185 |
A | HIS208 |
A | ASN210 |
A | TRP211 |
A | SER221 |
A | ASN226 |
A | LYS227 |
A | SER253 |
site_id | AC2 |
残基数 | 22 |
詳細 | BINDING SITE FOR RESIDUE NDP A 410 |
鎖名 | 残基 |
A | GLY7 |
A | THR9 |
A | GLY10 |
A | SER11 |
A | ILE12 |
A | ALA34 |
A | GLY35 |
A | LYS36 |
A | ASN37 |
A | ASP56 |
A | ALA99 |
A | ILE100 |
A | VAL101 |
A | ALA104 |
A | ALA122 |
A | ASN123 |
A | LYS124 |
A | ASP149 |
A | MET275 |
A | HOH443 |
A | HOH447 |
A | HOH475 |
site_id | AC3 |
残基数 | 15 |
詳細 | BINDING SITE FOR RESIDUE SYD B 801 |
鎖名 | 残基 |
B | GLU151 |
B | GLY184 |
B | SER185 |
B | HIS208 |
B | ASN210 |
B | TRP211 |
B | MET213 |
B | SER221 |
B | ASN226 |
B | LYS227 |
B | SER253 |
B | HOH414 |
B | HOH445 |
B | HOH473 |
B | HOH585 |
site_id | AC4 |
残基数 | 23 |
詳細 | BINDING SITE FOR RESIDUE NDP B 410 |
鎖名 | 残基 |
B | GLY7 |
B | THR9 |
B | GLY10 |
B | SER11 |
B | ILE12 |
B | ALA34 |
B | GLY35 |
B | LYS36 |
B | ASN37 |
B | ASP56 |
B | ALA99 |
B | ILE100 |
B | VAL101 |
B | ALA104 |
B | ALA122 |
B | ASN123 |
B | LYS124 |
B | ASP149 |
B | MET275 |
B | HOH413 |
B | HOH435 |
B | HOH450 |
B | HOH594 |
SwissProt/UniProtに記載されている蛋白質分子機能情報
site_id | SWS_FT_FI1 |
残基数 | 34 |
詳細 | BINDING: BINDING => ECO:0000269|PubMed:15567415, ECO:0007744|PDB:1Q0Q |
鎖名 | 残基 | 詳細 |
A | THR9 | |
A | GLU125 | |
A | SER150 | |
A | SER185 | |
A | HIS208 | |
A | GLY214 | |
A | SER221 | |
A | ASN226 | |
A | LYS227 | |
B | THR9 | |
B | GLY10 | |
A | GLY10 | |
B | SER11 | |
B | ILE12 | |
B | GLY35 | |
B | LYS36 | |
B | ASN37 | |
B | ASN123 | |
B | LYS124 | |
B | GLU125 | |
B | SER150 | |
B | SER185 | |
A | SER11 | |
B | HIS208 | |
B | GLY214 | |
B | SER221 | |
B | ASN226 | |
B | LYS227 | |
A | ILE12 | |
A | GLY35 | |
A | LYS36 | |
A | ASN37 | |
A | ASN123 | |
A | LYS124 |
site_id | SWS_FT_FI2 |
残基数 | 6 |
詳細 | BINDING: BINDING => ECO:0000269|PubMed:12621040, ECO:0007744|PDB:1ONO, ECO:0007744|PDB:1ONP |
鎖名 | 残基 | 詳細 |
A | ASP149 | |
A | GLU151 | |
A | GLU230 | |
B | ASP149 | |
B | GLU151 | |
B | GLU230 |