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2C0Z

The 1.6 A resolution crystal structure of NovW: a 4-keto-6-deoxy sugar epimerase from the novobiocin biosynthetic gene cluster of Streptomyces spheroides

Functional Information from GO Data
ChainGOidnamespacecontents
A0005829cellular_componentcytosol
A0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
A0016853molecular_functionisomerase activity
A0017000biological_processantibiotic biosynthetic process
A0019305biological_processdTDP-rhamnose biosynthetic process
A0043642biological_processnovobiocin biosynthetic process
A0045226biological_processextracellular polysaccharide biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1191
ChainResidue
AARG19
ASER165
AARG167
AHOH2038
AHOH2197
AHOH2198

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1192
ChainResidue
APRO16
ASER107
AARG109
AHOH2199
ASER-1
AARG-3
ATHR15

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1193
ChainResidue
AASP105
AARG108
AHOH2035
AHOH2200

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1194
ChainResidue
APRO5
AILE8
AGLU9
AGLY10
AVAL11
ATRP12
AHOH2025

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:Q9HU21
ChainResidueDetails
AHIS62

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q9HU21
ChainResidueDetails
ATYR132

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q9HU21
ChainResidueDetails
AARG23
AASP28
AGLN47
AARG59
ALYS72
AHIS119
AGLU143
AARG167

site_idSWS_FT_FI4
Number of Residues1
DetailsSITE: Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose => ECO:0000250|UniProtKB:Q5SFD1
ChainResidueDetails
ATYR138

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dzr
ChainResidueDetails
AHIS62
AASP168

225158

數據於2024-09-18公開中

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