1ZNN
Structure of the synthase subunit of PLP synthase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006520 | biological_process | amino acid metabolic process |
A | 0008615 | biological_process | pyridoxine biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0016843 | molecular_function | amine-lyase activity |
A | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
A | 0042819 | biological_process | vitamin B6 biosynthetic process |
A | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
B | 0006520 | biological_process | amino acid metabolic process |
B | 0008615 | biological_process | pyridoxine biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0016843 | molecular_function | amine-lyase activity |
B | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
B | 0042819 | biological_process | vitamin B6 biosynthetic process |
B | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
C | 0006520 | biological_process | amino acid metabolic process |
C | 0008615 | biological_process | pyridoxine biosynthetic process |
C | 0016829 | molecular_function | lyase activity |
C | 0016843 | molecular_function | amine-lyase activity |
C | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
C | 0042819 | biological_process | vitamin B6 biosynthetic process |
C | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
D | 0006520 | biological_process | amino acid metabolic process |
D | 0008615 | biological_process | pyridoxine biosynthetic process |
D | 0016829 | molecular_function | lyase activity |
D | 0016843 | molecular_function | amine-lyase activity |
D | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
D | 0042819 | biological_process | vitamin B6 biosynthetic process |
D | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
E | 0006520 | biological_process | amino acid metabolic process |
E | 0008615 | biological_process | pyridoxine biosynthetic process |
E | 0016829 | molecular_function | lyase activity |
E | 0016843 | molecular_function | amine-lyase activity |
E | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
E | 0042819 | biological_process | vitamin B6 biosynthetic process |
E | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
F | 0006520 | biological_process | amino acid metabolic process |
F | 0008615 | biological_process | pyridoxine biosynthetic process |
F | 0016829 | molecular_function | lyase activity |
F | 0016843 | molecular_function | amine-lyase activity |
F | 0036381 | molecular_function | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity |
F | 0042819 | biological_process | vitamin B6 biosynthetic process |
F | 0042823 | biological_process | pyridoxal phosphate biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 2401 |
Chain | Residue |
A | HIS115 |
A | ARG137 |
A | ARG138 |
A | HOH3097 |
C | LYS187 |
site_id | AC2 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE SO4 A 2402 |
Chain | Residue |
A | GLY214 |
A | MRD2888 |
A | HOH2934 |
A | HOH2940 |
A | HOH2950 |
A | HOH2968 |
A | HOH3213 |
A | PRO152 |
A | GLY153 |
A | THR154 |
A | GLY155 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 2403 |
Chain | Residue |
B | GLU134 |
B | ARG137 |
B | ARG138 |
B | LYS187 |
B | HOH2993 |
B | HOH3002 |
B | HOH3149 |
B | HOH3186 |
site_id | AC4 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE SO4 B 2404 |
Chain | Residue |
B | PRO152 |
B | GLY153 |
B | THR154 |
B | GLY155 |
B | GLY214 |
B | HOH2933 |
B | HOH2966 |
B | HOH2974 |
B | HOH2980 |
B | HOH3219 |
B | HOH3235 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 C 2405 |
Chain | Residue |
A | LYS187 |
C | HIS115 |
C | GLU134 |
C | ARG137 |
C | ARG138 |
C | HOH2933 |
site_id | AC6 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE SO4 C 2406 |
Chain | Residue |
C | PRO152 |
C | GLY153 |
C | THR154 |
C | GLY155 |
C | GLY213 |
C | GLY214 |
C | MRD2890 |
C | HOH2939 |
C | HOH3005 |
C | HOH3078 |
C | HOH3133 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 D 2407 |
Chain | Residue |
D | HIS115 |
D | GLU134 |
D | ARG137 |
D | ARG138 |
D | HOH3012 |
D | HOH3020 |
F | LYS187 |
site_id | AC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 D 2408 |
Chain | Residue |
D | PRO152 |
D | GLY153 |
D | THR154 |
D | GLY155 |
D | GLY213 |
D | GLY214 |
D | HOH2951 |
D | HOH2957 |
D | HOH3021 |
D | HOH3031 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 E 2409 |
Chain | Residue |
E | HIS115 |
E | ARG137 |
E | ARG138 |
E | LYS187 |
E | HOH2995 |
E | HOH3025 |
site_id | BC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 E 2410 |
Chain | Residue |
E | GLY153 |
E | THR154 |
E | GLY155 |
E | GLY213 |
E | GLY214 |
E | HOH2913 |
E | HOH2924 |
E | HOH2970 |
E | HOH3000 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 F 2411 |
Chain | Residue |
D | LYS187 |
F | GLU134 |
F | ARG137 |
F | ARG138 |
F | HOH3016 |
F | HOH3044 |
site_id | BC3 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 F 2412 |
Chain | Residue |
F | HOH3036 |
F | PRO152 |
F | GLY153 |
F | THR154 |
F | GLY155 |
F | GLY213 |
F | GLY214 |
F | MRD2893 |
F | HOH2966 |
F | HOH2975 |
site_id | BC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE MRD A 2888 |
Chain | Residue |
A | ASP24 |
A | LYS81 |
A | ASP102 |
A | GLY213 |
A | PHE233 |
A | VAL234 |
A | GLY235 |
A | SO42402 |
A | HOH2934 |
A | HOH2963 |
site_id | BC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE MRD B 2889 |
Chain | Residue |
B | ASP24 |
B | LYS81 |
B | ASP102 |
B | GLY213 |
B | PHE233 |
B | VAL234 |
B | GLY235 |
B | HOH2952 |
B | HOH2974 |
site_id | BC6 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE MRD C 2890 |
Chain | Residue |
C | ASP24 |
C | LYS81 |
C | ASP102 |
C | GLY213 |
C | PHE233 |
C | VAL234 |
C | SO42406 |
C | HOH3005 |
C | HOH3009 |
C | HOH3133 |
site_id | BC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MRD D 2891 |
Chain | Residue |
D | ASP24 |
D | LYS81 |
D | ASP102 |
D | GLY213 |
D | PHE233 |
D | VAL234 |
D | GLY235 |
D | HOH2951 |
site_id | BC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MRD E 2892 |
Chain | Residue |
E | ASP24 |
E | LYS81 |
E | ASP102 |
E | GLY213 |
E | PHE233 |
E | VAL234 |
E | GLY235 |
E | HOH2932 |
site_id | BC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE MRD F 2893 |
Chain | Residue |
F | ASP24 |
F | LYS81 |
F | ASP102 |
F | GLY213 |
F | PHE233 |
F | VAL234 |
F | GLY235 |
F | SO42412 |
F | HOH2962 |
Functional Information from PROSITE/UniProt
site_id | PS01235 |
Number of Residues | 19 |
Details | PDXS_SNZ_1 PdxS/SNZ family signature. LPVVNFAAGGVTTPADAAL |
Chain | Residue | Details |
A | LEU205-LEU223 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Schiff-base intermediate with D-ribose 5-phosphate => ECO:0000255|HAMAP-Rule:MF_01824, ECO:0000305|PubMed:15911615 |
Chain | Residue | Details |
A | LYS81 | |
B | LYS81 | |
C | LYS81 | |
D | LYS81 | |
E | LYS81 | |
F | LYS81 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01824, ECO:0000305|PubMed:15911615 |
Chain | Residue | Details |
A | ASP24 | |
B | ASP24 | |
C | ASP24 | |
D | ASP24 | |
E | ASP24 | |
F | ASP24 |
site_id | SWS_FT_FI3 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01824 |
Chain | Residue | Details |
A | GLY153 | |
C | ARG165 | |
C | GLY214 | |
C | GLY235 | |
D | GLY153 | |
D | ARG165 | |
D | GLY214 | |
D | GLY235 | |
E | GLY153 | |
E | ARG165 | |
E | GLY214 | |
A | ARG165 | |
E | GLY235 | |
F | GLY153 | |
F | ARG165 | |
F | GLY214 | |
F | GLY235 | |
A | GLY214 | |
A | GLY235 | |
B | GLY153 | |
B | ARG165 | |
B | GLY214 | |
B | GLY235 | |
C | GLY153 |