Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1QLE

CRYO-STRUCTURE OF THE PARACOCCUS DENITRIFICANS FOUR-SUBUNIT CYTOCHROME C OXIDASE IN THE COMPLETELY OXIDIZED STATE COMPLEXED WITH AN ANTIBODY FV FRAGMENT

GO(遺伝子オントロジー)由来の情報
鎖名GO(遺伝子オントロジー)id名前空間内容
A0004129molecular_functioncytochrome-c oxidase activity
A0005886cellular_componentplasma membrane
A0006119biological_processoxidative phosphorylation
A0009060biological_processaerobic respiration
A0015990biological_processelectron transport coupled proton transport
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0022904biological_processrespiratory electron transport chain
A0045277cellular_componentrespiratory chain complex IV
A0046872molecular_functionmetal ion binding
A1902600biological_processproton transmembrane transport
B0004129molecular_functioncytochrome-c oxidase activity
B0005507molecular_functioncopper ion binding
B0005886cellular_componentplasma membrane
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0022900biological_processelectron transport chain
B0042773biological_processATP synthesis coupled electron transport
B0046872molecular_functionmetal ion binding
B1902600biological_processproton transmembrane transport
C0004129molecular_functioncytochrome-c oxidase activity
C0005886cellular_componentplasma membrane
C0009055molecular_functionelectron transfer activity
C0009060biological_processaerobic respiration
C0016020cellular_componentmembrane
C0019646biological_processaerobic electron transport chain
C0022904biological_processrespiratory electron transport chain
C1902600biological_processproton transmembrane transport
PDBデータベースに由来する情報
site_idAC1
残基数3
詳細BINDING SITE FOR RESIDUE CU Y 2
鎖名残基
AHIS276
AHIS325
AHIS326

site_idAC2
残基数5
詳細BINDING SITE FOR RESIDUE CA Z 1
鎖名残基
AGLU56
AHIS59
APRO60
AGLY61
AGLN63

site_idAC3
残基数3
詳細BINDING SITE FOR RESIDUE MN Z 2
鎖名残基
AASP404
BGLU218
AHIS403

site_idAC4
残基数26
詳細BINDING SITE FOR RESIDUE HEA X 1
鎖名残基
ALEU36
AALA39
AGLY40
AVAL47
ATHR50
AARG54
ATRP87
AILE91
AHIS94
AMET98
AVAL103
AALA106
AGLY163
ATRP164
ATYR406
AVAL409
APHE412
AHIS413
AMET416
ASER417
AVAL421
AMET452
AARG473
AARG474
ATYR475
APHE500

site_idAC5
残基数22
詳細BINDING SITE FOR RESIDUE HEA X 2
鎖名残基
ATRP164
AVAL279
ATYR280
AHIS325
AHIS326
AALA348
ATHR351
AGLY387
AGLY390
AVAL391
ALEU393
ASER394
AASP399
AHIS403
AVAL408
AHIS411
APHE412
AVAL415
AARG473
AARG474
BVAL45
BILE88

site_idAC6
残基数6
詳細BINDING SITE FOR RESIDUE CUA Y 1
鎖名残基
BHIS181
BCYS216
BGLU218
BCYS220
BHIS224
BMET227

site_idAC7
残基数13
詳細BINDING SITE FOR RESIDUE PC1 P 2
鎖名残基
ALEU233
ATRP323
AGLN336
ATYR339
BARG198
CVAL102
CTRP106
CLYS110
CTYR114
CPRO121
CASP124
DSER37
DASN48

site_idAC8
残基数20
詳細BINDING SITE FOR RESIDUE PC1 P 3
鎖名残基
CLEU55
CTRP66
CVAL69
CVAL70
CGLY73
CGLU74
CHIS78
CLEU86
CPHE90
CILE222
CILE225
CPHE226
CVAL229
CARG233
CGLN238
CTHR240
CGLN243
CHIS244
CVAL245
CGLY246

UniProtにおけるモチーフ・データベースPROSITEからの機能情報
site_idPS00077
残基数55
詳細COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyiiilpgfgiishvistfakkpifgylpmvlamaaigilgfvvwa..HH
鎖名残基詳細
ATRP272-HIS326

site_idPS00078
残基数49
詳細COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHawtipafavkqdavpgriaqlwfsvdqegvyfgq......CselCginHayM
鎖名残基詳細
BVAL179-MET227

SwissProt/UniProtに記載されている蛋白質分子機能情報
site_idSWS_FT_FI1
残基数31
詳細TRANSMEM: Helical
鎖名残基詳細
DARG17-ASN48
CHIS78-THR79
CASP167-ARG168
CGLN238-HIS244

site_idSWS_FT_FI2
残基数1
詳細TOPO_DOM: Periplasmic
鎖名残基詳細
DSER49
CTRP49-GLU77
CPRO80-PRO115
CLEU140-GLY166
CLYS169-ALA197
CVAL204-GLY237

site_idSWS_FT_FI3
残基数39
詳細TOPO_DOM: Periplasmic
鎖名残基詳細
CGLY37-PRO48
CMET116-HIS139
CPHE198-THR203

site_idSWS_FT_FI4
残基数6
詳細BINDING:
鎖名残基詳細
BHIS181
BCYS216
BGLU218
BCYS220
BHIS224
BMET227

site_idSWS_FT_FI5
残基数1
詳細MOD_RES: Pyrrolidone carboxylic acid => ECO:0000269|PubMed:2820725
鎖名残基詳細
BGLN1

site_idSWS_FT_FI6
残基数29
詳細TRANSMEM: Helical; Name=IV
鎖名残基詳細
ATYR177-ASN206

site_idSWS_FT_FI7
残基数33
詳細TRANSMEM: Helical; Name=V
鎖名残基詳細
APRO218-PHE251

site_idSWS_FT_FI8
残基数36
詳細TRANSMEM: Helical; Name=VI
鎖名残基詳細
AASP263-LYS299

site_idSWS_FT_FI9
残基数27
詳細TRANSMEM: Helical; Name=VII
鎖名残基詳細
AGLY304-GLY331

site_idSWS_FT_FI10
残基数31
詳細TRANSMEM: Helical; Name=VIII
鎖名残基詳細
ASER333-GLY364

site_idSWS_FT_FI11
残基数25
詳細TRANSMEM: Helical; Name=IX
鎖名残基詳細
ALYS370-GLN395

site_idSWS_FT_FI12
残基数32
詳細TRANSMEM: Helical; Name=X
鎖名残基詳細
ATHR405-GLY437

site_idSWS_FT_FI13
残基数28
詳細TRANSMEM: Helical; Name=XI
鎖名残基詳細
APRO441-GLN469

site_idSWS_FT_FI14
残基数35
詳細TRANSMEM: Helical; Name=XII
鎖名残基詳細
APRO479-GLY514

site_idSWS_FT_FI15
残基数3
詳細BINDING: axial binding residue
鎖名残基詳細
AHIS94
AHIS411
AHIS413

site_idSWS_FT_FI16
残基数4
詳細BINDING:
鎖名残基詳細
AHIS276
ATYR280
AHIS325
AHIS326

site_idSWS_FT_FI17
残基数2
詳細CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr)
鎖名残基詳細
AHIS276
ATYR280

CSAにおける酵素触媒機能の情報
site_idCSA1
残基数7
詳細Annotated By Reference To The Literature 1ar1
鎖名残基詳細
AARG473
ATYR280
AHIS411
AHIS276
AARG474
APHE412
AHIS413

site_idCSA2
残基数2
詳細Annotated By Reference To The Literature 1ar1
鎖名残基詳細
AGLU278
ALYS354

225158

件を2024-09-18に公開中

PDB statisticsPDBj update infoContact PDBjnumon