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1OCO

BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE

GO(遺伝子オントロジー)由来の情報
鎖名GO(遺伝子オントロジー)id名前空間内容
A0004129molecular_functioncytochrome-c oxidase activity
A0005739cellular_componentmitochondrion
A0005743cellular_componentmitochondrial inner membrane
A0005751cellular_componentmitochondrial respiratory chain complex IV
A0006119biological_processoxidative phosphorylation
A0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
A0009060biological_processaerobic respiration
A0015990biological_processelectron transport coupled proton transport
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0045277cellular_componentrespiratory chain complex IV
A0046872molecular_functionmetal ion binding
A0070469cellular_componentrespirasome
B0004129molecular_functioncytochrome-c oxidase activity
B0005507molecular_functioncopper ion binding
B0005739cellular_componentmitochondrion
B0005743cellular_componentmitochondrial inner membrane
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0022900biological_processelectron transport chain
B0042773biological_processATP synthesis coupled electron transport
B0045277cellular_componentrespiratory chain complex IV
B0046872molecular_functionmetal ion binding
B0070469cellular_componentrespirasome
B1902600biological_processproton transmembrane transport
C0004129molecular_functioncytochrome-c oxidase activity
C0005739cellular_componentmitochondrion
C0005743cellular_componentmitochondrial inner membrane
C0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
C0008535biological_processrespiratory chain complex IV assembly
C0009055molecular_functionelectron transfer activity
C0016020cellular_componentmembrane
C0019646biological_processaerobic electron transport chain
C0022904biological_processrespiratory electron transport chain
C0045277cellular_componentrespiratory chain complex IV
C1902600biological_processproton transmembrane transport
D0005751cellular_componentmitochondrial respiratory chain complex IV
D0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
E0005743cellular_componentmitochondrial inner membrane
E0005751cellular_componentmitochondrial respiratory chain complex IV
E0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
F0005740cellular_componentmitochondrial envelope
F0005751cellular_componentmitochondrial respiratory chain complex IV
F0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
G0005743cellular_componentmitochondrial inner membrane
G0005751cellular_componentmitochondrial respiratory chain complex IV
H0005739cellular_componentmitochondrion
H0005743cellular_componentmitochondrial inner membrane
H0006119biological_processoxidative phosphorylation
H0016020cellular_componentmembrane
H0045277cellular_componentrespiratory chain complex IV
I0005739cellular_componentmitochondrion
I0005743cellular_componentmitochondrial inner membrane
I0006119biological_processoxidative phosphorylation
I0016020cellular_componentmembrane
I0045277cellular_componentrespiratory chain complex IV
J0005746cellular_componentmitochondrial respirasome
J0005751cellular_componentmitochondrial respiratory chain complex IV
J0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
K0005746cellular_componentmitochondrial respirasome
K0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
L0005751cellular_componentmitochondrial respiratory chain complex IV
L0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
M0005751cellular_componentmitochondrial respiratory chain complex IV
M0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
N0004129molecular_functioncytochrome-c oxidase activity
N0005739cellular_componentmitochondrion
N0005743cellular_componentmitochondrial inner membrane
N0005751cellular_componentmitochondrial respiratory chain complex IV
N0006119biological_processoxidative phosphorylation
N0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
N0009060biological_processaerobic respiration
N0015990biological_processelectron transport coupled proton transport
N0016020cellular_componentmembrane
N0020037molecular_functionheme binding
N0045277cellular_componentrespiratory chain complex IV
N0046872molecular_functionmetal ion binding
N0070469cellular_componentrespirasome
O0004129molecular_functioncytochrome-c oxidase activity
O0005507molecular_functioncopper ion binding
O0005739cellular_componentmitochondrion
O0005743cellular_componentmitochondrial inner membrane
O0016020cellular_componentmembrane
O0016491molecular_functionoxidoreductase activity
O0022900biological_processelectron transport chain
O0042773biological_processATP synthesis coupled electron transport
O0045277cellular_componentrespiratory chain complex IV
O0046872molecular_functionmetal ion binding
O0070469cellular_componentrespirasome
O1902600biological_processproton transmembrane transport
P0004129molecular_functioncytochrome-c oxidase activity
P0005739cellular_componentmitochondrion
P0005743cellular_componentmitochondrial inner membrane
P0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
P0008535biological_processrespiratory chain complex IV assembly
P0009055molecular_functionelectron transfer activity
P0016020cellular_componentmembrane
P0019646biological_processaerobic electron transport chain
P0022904biological_processrespiratory electron transport chain
P0045277cellular_componentrespiratory chain complex IV
P1902600biological_processproton transmembrane transport
Q0005751cellular_componentmitochondrial respiratory chain complex IV
Q0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
R0005743cellular_componentmitochondrial inner membrane
R0005751cellular_componentmitochondrial respiratory chain complex IV
R0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
S0005740cellular_componentmitochondrial envelope
S0005751cellular_componentmitochondrial respiratory chain complex IV
S0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
T0005743cellular_componentmitochondrial inner membrane
T0005751cellular_componentmitochondrial respiratory chain complex IV
U0005739cellular_componentmitochondrion
U0005743cellular_componentmitochondrial inner membrane
U0006119biological_processoxidative phosphorylation
U0016020cellular_componentmembrane
U0045277cellular_componentrespiratory chain complex IV
V0005739cellular_componentmitochondrion
V0005743cellular_componentmitochondrial inner membrane
V0006119biological_processoxidative phosphorylation
V0016020cellular_componentmembrane
V0045277cellular_componentrespiratory chain complex IV
W0005746cellular_componentmitochondrial respirasome
W0005751cellular_componentmitochondrial respiratory chain complex IV
W0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
X0005746cellular_componentmitochondrial respirasome
X0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
Y0005751cellular_componentmitochondrial respiratory chain complex IV
Y0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
Z0005751cellular_componentmitochondrial respiratory chain complex IV
Z0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
PDBデータベースに由来する情報
site_idAC1
残基数4
詳細BINDING SITE FOR RESIDUE CU A 517
鎖名残基
ACMO520
AHIS240
AHIS290
AHIS291

site_idAC2
残基数3
詳細BINDING SITE FOR RESIDUE MG A 518
鎖名残基
AHIS368
AASP369
BGLU198

site_idAC3
残基数4
詳細BINDING SITE FOR RESIDUE NA A 519
鎖名残基
AGLU40
AGLN43
AGLY45
ASER441

site_idAC4
残基数5
詳細BINDING SITE FOR RESIDUE CU B 228
鎖名残基
BHIS161
BCYS196
BCYS200
BMET207
BCU229

site_idAC5
残基数5
詳細BINDING SITE FOR RESIDUE CU B 229
鎖名残基
BCYS196
BGLU198
BCYS200
BHIS204
BCU228

site_idAC6
残基数4
詳細BINDING SITE FOR RESIDUE ZN F 99
鎖名残基
FCYS60
FCYS62
FCYS82
FCYS85

site_idAC7
残基数4
詳細BINDING SITE FOR RESIDUE CU N 517
鎖名残基
NHIS240
NHIS290
NHIS291
NCMO520

site_idAC8
残基数3
詳細BINDING SITE FOR RESIDUE MG N 518
鎖名残基
NHIS368
NASP369
OGLU198

site_idAC9
残基数4
詳細BINDING SITE FOR RESIDUE NA N 519
鎖名残基
NGLU40
NGLN43
NGLY45
NSER441

site_idBC1
残基数5
詳細BINDING SITE FOR RESIDUE CU O 228
鎖名残基
OHIS161
OCYS196
OCYS200
OMET207
OCU229

site_idBC2
残基数5
詳細BINDING SITE FOR RESIDUE CU O 229
鎖名残基
OCYS196
OGLU198
OCYS200
OHIS204
OCU228

site_idBC3
残基数4
詳細BINDING SITE FOR RESIDUE ZN S 99
鎖名残基
SCYS60
SCYS62
SCYS82
SCYS85

site_idBC4
残基数24
詳細BINDING SITE FOR RESIDUE HEA A 515
鎖名残基
AGLY27
ASER34
AILE37
AARG38
ATYR54
AHIS61
AALA62
AMET65
AVAL70
AGLY125
ATRP126
ATYR371
APHE377
AHIS378
ALEU381
ASER382
AVAL386
AMET390
APHE425
AGLN428
AARG438
AARG439
ATYR440
AMET468

site_idBC5
残基数22
詳細BINDING SITE FOR RESIDUE HEA A 516
鎖名残基
AARG438
ACMO520
BILE72
ATRP126
AVAL243
ATYR244
AHIS290
AHIS291
ATHR309
AILE312
AGLY317
AGLY352
AGLY355
AILE356
ALEU358
AALA359
AASP364
AHIS368
AHIS376
APHE377
AVAL380
ALEU381

site_idBC6
残基数5
詳細BINDING SITE FOR RESIDUE CMO A 520
鎖名残基
AHIS240
AHIS290
AHIS291
AHEA516
ACU517

site_idBC7
残基数23
詳細BINDING SITE FOR RESIDUE HEA N 515
鎖名残基
NGLY27
NSER34
NILE37
NARG38
NTYR54
NHIS61
NALA62
NMET65
NVAL70
NGLY125
NTRP126
NTYR371
NPHE377
NHIS378
NLEU381
NSER382
NMET390
NPHE425
NGLN428
NARG438
NARG439
NTYR440
NMET468

site_idBC8
残基数23
詳細BINDING SITE FOR RESIDUE HEA N 516
鎖名残基
NTRP126
NVAL243
NTYR244
NHIS290
NHIS291
NTHR309
NILE312
NTHR316
NGLY317
NGLY352
NGLY355
NILE356
NLEU358
NALA359
NASP364
NHIS368
NHIS376
NPHE377
NVAL380
NLEU381
NARG438
NCMO520
OILE72

site_idBC9
残基数5
詳細BINDING SITE FOR RESIDUE CMO N 520
鎖名残基
NHIS240
NVAL243
NHIS291
NHEA516
NCU517

site_idCXB
残基数6
詳細CARBON MONOXIDE BINDING SITE.
鎖名残基
AHEA516
ACU517
ACMO520
NHEA516
NCU517
NCMO520

UniProtにおけるモチーフ・データベースPROSITEからの機能情報
site_idPS00077
残基数56
詳細COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwa.HH
鎖名残基詳細
ATRP236-HIS291

site_idPS00848
残基数23
詳細COX5B_1 Cytochrome c oxidase subunit Vb, zinc binding region signature. VIWfwlhkgeaqrCpsCGthYKL
鎖名残基詳細
FVAL69-LEU91

site_idPS01329
残基数18
詳細COX6A Cytochrome c oxidase subunit VIa signature. IRtKpFsWGDGnHTfFhN
鎖名残基詳細
GILE55-ASN72

site_idPS00078
残基数49
詳細COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. VlHswavpslglktdaipgrlnqttlmssrpglyygq......CseiCgsnHsfM
鎖名残基詳細
BVAL159-MET207

SwissProt/UniProtに記載されている蛋白質分子機能情報
site_idSWS_FT_FI1
残基数20
詳細TOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:27605664
鎖名残基詳細
MILE1-SER11
NSER262-GLY269
NSER401-ASN406
NLYS479-LYS514
ZILE1-SER11
SLEU91
SPRO93
PMET1-PRO15
PPHE67-THR72
PGLU153-ASP155
PLYS224-HIS232
NMET171-PRO182

site_idSWS_FT_FI2
残基数46
詳細TRANSMEM: Helical => ECO:0000269|PubMed:27605664
鎖名残基詳細
MPRO12-TYR35
ZPRO12-TYR35
STHR68
SGLY86

site_idSWS_FT_FI3
残基数20
詳細TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
鎖名残基詳細
MHIS36-ALA46
ZHIS36-ALA46
CALA184-ASP190
CTYR257-SER261
PPHE35-MET40
PLEU106-GLU128
PALA184-ASP190
PTYR257-SER261

site_idSWS_FT_FI4
残基数2
詳細MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P17665
鎖名残基詳細
LLYS9
YLYS9
QLYS7
QLYS38

site_idSWS_FT_FI5
残基数2
詳細MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P13073
鎖名残基詳細
DLYS31
OCYS200
OHIS204
OMET207
QLYS31
BGLU198
BCYS200
BHIS204
BMET207
OHIS161
OCYS196
OGLU198

site_idSWS_FT_FI6
残基数4
詳細MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P10888
鎖名残基詳細
DSER34
DSER36
QSER34
QSER36
NARG213-ASP227
NVAL287-ASP298

site_idSWS_FT_FI7
残基数2
詳細MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P19783
鎖名残基詳細
DLYS45
QLYS45

site_idSWS_FT_FI8
残基数64
詳細TRANSMEM: Helical; Name=VI => ECO:0000269|PubMed:27605664
鎖名残基詳細
CGLY191-LEU223
PGLY191-LEU223

site_idSWS_FT_FI9
残基数46
詳細TRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664
鎖名残基詳細
CPHE233-ILE256
PPHE233-ILE256

site_idSWS_FT_FI10
残基数32
詳細TRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664
鎖名残基詳細
ATYR270-ILE286
NTYR270-ILE286

site_idSWS_FT_FI11
残基数56
詳細TRANSMEM: Helical; Name=VIII => ECO:0000269|PubMed:27605664
鎖名残基詳細
AVAL299-LEU327
NVAL299-LEU327

site_idSWS_FT_FI12
残基数14
詳細TOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:27605664
鎖名残基詳細
AHIS328-SER335
NHIS328-SER335

site_idSWS_FT_FI13
残基数42
詳細TRANSMEM: Helical; Name=IX => ECO:0000269|PubMed:27605664
鎖名残基詳細
APRO336-VAL357
NPRO336-VAL357

site_idSWS_FT_FI14
残基数48
詳細TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
鎖名残基詳細
ALEU358-THR370
ASER434-ALA446
NLEU358-THR370
NSER434-ALA446

site_idSWS_FT_FI15
残基数58
詳細TRANSMEM: Helical; Name=X => ECO:0000269|PubMed:27605664
鎖名残基詳細
ATYR371-PHE400
NTYR371-PHE400

site_idSWS_FT_FI16
残基数52
詳細TRANSMEM: Helical; Name=XI => ECO:0000269|PubMed:27605664
鎖名残基詳細
AASP407-LEU433
NASP407-LEU433

site_idSWS_FT_FI17
残基数62
詳細TRANSMEM: Helical; Name=XII => ECO:0000269|PubMed:27605664
鎖名残基詳細
ATYR447-SER478
NTYR447-SER478

site_idSWS_FT_FI18
残基数6
詳細BINDING: BINDING => ECO:0000269|PubMed:27605664, ECO:0000305|PubMed:23537388
鎖名残基詳細
AGLU40
AGLY45
ASER441
NGLU40
NGLY45
NSER441

site_idSWS_FT_FI19
残基数6
詳細BINDING: axial binding residue => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158
鎖名残基詳細
AHIS61
AHIS376
AHIS378
NHIS61
NHIS376
NHIS378

site_idSWS_FT_FI20
残基数10
詳細BINDING: BINDING => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158
鎖名残基詳細
AHIS240
NASP369
AHIS290
AHIS291
AHIS368
AASP369
NHIS240
NHIS290
NHIS291
NHIS368

site_idSWS_FT_FI21
残基数2
詳細BINDING: BINDING => ECO:0000305
鎖名残基詳細
ATYR244
NTYR244

site_idSWS_FT_FI22
残基数2
詳細MOD_RES: N-formylmethionine => ECO:0000269|PubMed:2165784
鎖名残基詳細
AMET1
NMET1

site_idSWS_FT_FI23
残基数4
詳細CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000269|PubMed:10338009
鎖名残基詳細
AHIS240
ATYR244
NHIS240
NTYR244

CSAにおける酵素触媒機能の情報
site_idMCSA1
残基数14
詳細M-CSA 124
鎖名残基詳細
AHIS61metal ligand
AHIS290metal ligand
AHIS291metal ligand, proton acceptor, proton donor
ATHR316proton acceptor, proton donor, proton relay
ALYS319proton acceptor, proton donor, proton relay
AARG438proton acceptor, proton donor, proton relay
AASP91proton acceptor, proton donor, proton relay
ATRP126proton acceptor, proton donor, proton relay
ASER156proton acceptor, proton donor, proton relay
ASER157proton acceptor, proton donor, proton relay
AHIS240covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
AGLU242proton acceptor, proton donor, proton relay
ATYR244covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
ASER255proton acceptor, proton donor, proton relay

site_idMCSA2
残基数14
詳細M-CSA 124
鎖名残基詳細
NHIS61metal ligand
NHIS290metal ligand
NHIS291metal ligand, proton acceptor, proton donor
NTHR316proton acceptor, proton donor, proton relay
NLYS319proton acceptor, proton donor, proton relay
NARG438proton acceptor, proton donor, proton relay
NASP91proton acceptor, proton donor, proton relay
NTRP126proton acceptor, proton donor, proton relay
NSER156proton acceptor, proton donor, proton relay
NSER157proton acceptor, proton donor, proton relay
NHIS240covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
NGLU242proton acceptor, proton donor, proton relay
NTYR244covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
NSER255proton acceptor, proton donor, proton relay

218853

件を2024-04-24に公開中

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