1N34

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

GO（遺伝子オントロジー）由来の情報

鎖名	GO（遺伝子オントロジー）id	名前空間	内容
B	0003723	molecular_function	RNA binding
B	0003735	molecular_function	structural constituent of ribosome
B	0005840	cellular_component	ribosome
B	0006412	biological_process	translation
B	0015935	cellular_component	small ribosomal subunit
B	0019843	molecular_function	rRNA binding
B	0022627	cellular_component	cytosolic small ribosomal subunit
B	1990904	cellular_component	ribonucleoprotein complex
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
C	0003729	molecular_function	mRNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0019843	molecular_function	rRNA binding
C	0022627	cellular_component	cytosolic small ribosomal subunit
C	1990904	cellular_component	ribonucleoprotein complex
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	0015935	cellular_component	small ribosomal subunit
D	0019843	molecular_function	rRNA binding
D	0042274	biological_process	ribosomal small subunit biogenesis
D	0046872	molecular_function	metal ion binding
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005737	cellular_component	cytoplasm
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0015935	cellular_component	small ribosomal subunit
E	0019843	molecular_function	rRNA binding
E	0043229	cellular_component	intracellular organelle
E	1990904	cellular_component	ribonucleoprotein complex
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0022627	cellular_component	cytosolic small ribosomal subunit
F	0043229	cellular_component	intracellular organelle
F	0070181	molecular_function	small ribosomal subunit rRNA binding
F	1990904	cellular_component	ribonucleoprotein complex
G	0000028	biological_process	ribosomal small subunit assembly
G	0000049	molecular_function	tRNA binding
G	0003723	molecular_function	RNA binding
G	0003729	molecular_function	mRNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0015935	cellular_component	small ribosomal subunit
G	0019843	molecular_function	rRNA binding
G	0022627	cellular_component	cytosolic small ribosomal subunit
G	1990904	cellular_component	ribonucleoprotein complex
H	0003723	molecular_function	RNA binding
H	0003735	molecular_function	structural constituent of ribosome
H	0005737	cellular_component	cytoplasm
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0019843	molecular_function	rRNA binding
H	0022627	cellular_component	cytosolic small ribosomal subunit
H	0043229	cellular_component	intracellular organelle
H	1990904	cellular_component	ribonucleoprotein complex
I	0000049	molecular_function	tRNA binding
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0005737	cellular_component	cytoplasm
I	0005840	cellular_component	ribosome
I	0006412	biological_process	translation
I	0019843	molecular_function	rRNA binding
I	0043229	cellular_component	intracellular organelle
I	1990904	cellular_component	ribonucleoprotein complex
J	0000049	molecular_function	tRNA binding
J	0003723	molecular_function	RNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	0015935	cellular_component	small ribosomal subunit
J	0019843	molecular_function	rRNA binding
J	1990904	cellular_component	ribonucleoprotein complex
K	0003723	molecular_function	RNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0019843	molecular_function	rRNA binding
K	0022627	cellular_component	cytosolic small ribosomal subunit
K	1990904	cellular_component	ribonucleoprotein complex
L	0000049	molecular_function	tRNA binding
L	0003723	molecular_function	RNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
L	0019843	molecular_function	rRNA binding
L	1990904	cellular_component	ribonucleoprotein complex
M	0000049	molecular_function	tRNA binding
M	0003676	molecular_function	nucleic acid binding
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005829	cellular_component	cytosol
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0015935	cellular_component	small ribosomal subunit
M	0019843	molecular_function	rRNA binding
M	1990904	cellular_component	ribonucleoprotein complex
N	0003723	molecular_function	RNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0008270	molecular_function	zinc ion binding
N	0019843	molecular_function	rRNA binding
N	0043229	cellular_component	intracellular organelle
N	0046872	molecular_function	metal ion binding
N	1990904	cellular_component	ribonucleoprotein complex
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0019843	molecular_function	rRNA binding
O	0022627	cellular_component	cytosolic small ribosomal subunit
O	0043229	cellular_component	intracellular organelle
O	1990904	cellular_component	ribonucleoprotein complex
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0015935	cellular_component	small ribosomal subunit
P	0043229	cellular_component	intracellular organelle
P	1990904	cellular_component	ribonucleoprotein complex
Q	0003723	molecular_function	RNA binding
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0022627	cellular_component	cytosolic small ribosomal subunit
Q	1990904	cellular_component	ribonucleoprotein complex
R	0003723	molecular_function	RNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0019843	molecular_function	rRNA binding
R	0070181	molecular_function	small ribosomal subunit rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
S	0000028	biological_process	ribosomal small subunit assembly
S	0003723	molecular_function	RNA binding
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0015935	cellular_component	small ribosomal subunit
S	0019843	molecular_function	rRNA binding
S	0022627	cellular_component	cytosolic small ribosomal subunit
S	0043229	cellular_component	intracellular organelle
S	1990904	cellular_component	ribonucleoprotein complex
T	0003723	molecular_function	RNA binding
T	0003735	molecular_function	structural constituent of ribosome
T	0005829	cellular_component	cytosol
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0015935	cellular_component	small ribosomal subunit
T	0019843	molecular_function	rRNA binding
T	0070181	molecular_function	small ribosomal subunit rRNA binding
T	1990904	cellular_component	ribonucleoprotein complex
V	0003723	molecular_function	RNA binding
V	0005840	cellular_component	ribosome
V	0019843	molecular_function	rRNA binding
V	1990904	cellular_component	ribonucleoprotein complex

PDBデータベースに由来する情報

site_id	AC1
残基数	6
詳細	BINDING SITE FOR RESIDUE ZN D 306

鎖名	残基
D	CYS9
D	CYS12
D	LEU19
D	LYS22
D	CYS26
D	CYS31

---

site_id	AC2
残基数	5
詳細	BINDING SITE FOR RESIDUE ZN N 307

鎖名	残基
N	CYS40
N	CYS43
A	G1202
N	CYS24
N	CYS27

---

UniProtにおけるモチーフ・データベースPROSITEからの機能情報

site_id	PS00632
残基数	25
詳細	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV

鎖名	残基	詳細
D	LEU97-VAL121

---

site_id	PS00962
残基数	12
詳細	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG

鎖名	残基	詳細
B	VAL7-GLY18

---

site_id	PS00361
残基数	16
詳細	RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT

鎖名	残基	詳細
J	ALA27-THR42

---

site_id	PS00054
残基数	23
詳細	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN

鎖名	残基	詳細
K	ILE95-ASN117

---

site_id	PS00052
残基数	27
詳細	RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA

鎖名	残基	詳細
G	ASP20-ALA46

---

site_id	PS00362
残基数	31
詳細	RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY

鎖名	残基	詳細
O	LEU39-TYR69

---

site_id	PS00057
残基数	24
詳細	RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR

鎖名	残基	詳細
R	ARG32-ARG55

---

site_id	PS00063
残基数	16
詳細	ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF

鎖名	残基	詳細
R	LEU66-PHE81

---

site_id	PS00323
残基数	25
詳細	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT

鎖名	残基	詳細
S	ASN53-THR77

---

site_id	PS00548
残基数	35
詳細	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG

鎖名	残基	詳細
C	ALA163-GLY197

---

site_id	PS00360
残基数	19
詳細	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL

鎖名	残基	詳細
I	GLY67-LEU85

---

site_id	PS00056
残基数	13
詳細	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS

鎖名	残基	詳細
Q	GLY54-SER66

---

site_id	PS00053
残基数	18
詳細	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR

鎖名	残基	詳細
H	GLY108-ARG125

---

site_id	PS01048
残基数	10
詳細	RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA

鎖名	残基	詳細
F	GLY44-ALA53

---

site_id	PS00055
残基数	8
詳細	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

鎖名	残基	詳細
L	LYS46-ARG53

---

site_id	PS00585
残基数	33
詳細	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV

鎖名	残基	詳細
E	GLY23-VAL55

---

site_id	PS00646
残基数	14
詳細	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ

鎖名	残基	詳細
M	ARG88-GLN101

---

site_id	PS00527
残基数	23
詳細	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR

鎖名	残基	詳細
N	ARG23-ARG45

---

SwissProt/UniProtに記載されている蛋白質分子機能情報

site_id	SWS_FT_FI1
残基数	4
詳細	BINDING: BINDING => ECO:0000269|PubMed:11866529

鎖名	残基	詳細
N	VAL25
N	GLY28
N	ARG41
N	LEU44

---