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1LDM

Refined crystal structure of dogfish M4 apo-lactate dehydrogenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004459molecular_functionL-lactate dehydrogenase activity
A0005737cellular_componentcytoplasm
A0006089biological_processlactate metabolic process
A0006090biological_processpyruvate metabolic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019752biological_processcarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues41
DetailsBINDING SITE FOR RESIDUE NAD A 330
ChainResidue
AVAL28
ALYS57
ALEU58
ALYS59
AGLY60
AGLU61
ASER79
ALYS81
AASP82
ATYR83
ATYR83
AGLY29
ATHR95
AALA96
AALA98
AARG99
AVAL136
ASER137
AASN138
ASER161
AHIS193
ALEU241
AASP52
ALYS242
ATYR244
ASER246
AOXM331
AHOH347
AHOH353
AHOH359
AHOH373
AHOH384
AHOH493
AVAL53
AHOH496
AHOH497
AVAL53
AMET54
AMET54
AGLU55
AASP56

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OXM A 331
ChainResidue
AARG106
AHIS193
AALA235
ANAD330

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE OXM A 332
ChainResidue
AGLN111
AARG171
AHIS186
AVAL291
AHOH335
AHOH424
AHOH439

Functional Information from PROSITE/UniProt
site_idPS00064
Number of Residues7
DetailsL_LDH L-lactate dehydrogenase active site. IGEHGDS
ChainResidueDetails
AILE190-SER196

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AGLY194

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:3430615
ChainResidueDetails
AALA30
AGLN100

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALEU107
APRO139
AILE249

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING:
ChainResidueDetails
APHE170

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N-acetylalanine => ECO:0000269|PubMed:838743
ChainResidueDetails
ATHR2

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 584
ChainResidueDetails
ALEU107electrostatic stabiliser
ASER167enhance reactivity
APHE170electrostatic stabiliser
AGLY194proton acceptor, proton donor

218853

數據於2024-04-24公開中

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