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6KBX

Crystal structure of yedK in complex with ssDNA containing abasic site

Experimental procedure
実験手法SINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-01-08
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.979
Spacegroup nameP 1 21 1
格子定数 [Å]47.092, 44.084, 54.731
格子定数 [度]90.00, 101.69, 90.00
精密化法
残基46.115 - 1.221
R因子0.1557
Rwork0.155
R-free0.16470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6kbs
結合長の平均二乗偏差(RMSD) [Å]0.005
結合角の平均二乗偏差(RMSD) [度]0.920
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Quality characteristics
 OverallInner shellOuter shell
分解能 [Å] (低)50.00050.0001.260
分解能 [Å] (高)1.2202.6301.220
Rmerge_l_obs0.0910.0650.619
Rmeas0.0980.0710.691
Rpim0.0380.0270.299
Total number of observations416830
独立反射数6446866636072
<I/σ(I)>5.1
完全性 [%]98.899.593.6
冗長性6.56.84.6
CC(1/2)0.9950.676
結晶化条件
結晶ID方法pH温度溶液条件
1EVAPORATION2930.2 M sodium formate, 20% PEG3350

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件を2024-09-18に公開中

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