6AA1
Crystal structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus bound with citrate
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-09 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.976251 |
Spacegroup name | P 21 21 21 |
格子定数 [Å] | 46.070, 86.960, 121.800 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 70.770 - 1.860 |
R因子 | 0.18826 |
Rwork | 0.186 |
R-free | 0.22517 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yln |
結合長の平均二乗偏差(RMSD) [Å] | 0.016 |
結合角の平均二乗偏差(RMSD) [度] | 1.807 |
Data reduction software | XDS (Version June 1, 2017) |
Data scaling software | autoPROC (1.1.7) |
Phasing software | MoRDa (22(2018-05-05)) |
Refinement software | REFMAC (5.8.0218) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 70.773 | 1.889 |
分解能 [Å] (高) | 1.857 | 1.857 |
Rmerge_l_obs | 0.142 | 1.140 |
Rmeas | 1.213 | |
Rpim | 0.050 | 0.407 |
独立反射数 | 42127 | 2069 |
<I/σ(I)> | 12.5 | 2.2 |
完全性 [%] | 99.9 | 100 |
冗長性 | 8.9 | 8.8 |
CC(1/2) | 0.997 | 0.664 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 20% PEG 550, 0.1 M Sodium Citrate pH 5.0 |