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5XJ8

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the lysphosphatidic acid form

Experimental procedure
実験手法SINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyCCD
Collection date2017-01-11
DetectorADSC QUANTUM 315r
Wavelength(s)0.97915
Spacegroup nameC 1 2 1
格子定数 [Å]123.888, 40.895, 91.705
格子定数 [度]90.00, 95.59, 90.00
精密化法
残基35.330 - 2.410
R因子0.23
Rwork0.228
R-free0.26350
Structure solution methodMOLECULAR REPLACEMENT
結合長の平均二乗偏差(RMSD) [Å]0.002
結合角の平均二乗偏差(RMSD) [度]0.459
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11.1_2575))
Quality characteristics
 OverallOuter shell
分解能 [Å] (低)35.3302.500
分解能 [Å] (高)2.4102.410
Rmerge_l_obs0.0990.750
Rpim0.0600.448
独立反射数18124
<I/σ(I)>11.372
完全性 [%]99.196.8
冗長性3.73.7
結晶化条件
結晶ID方法pH温度溶液条件
1LIPIDIC CUBIC PHASE82931mol% of palmitoyl lysophosphatidic acid, 39% PEG 350 MME, 0.04M NaCl, 0.04M Tris HCl pH 8.0

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件を2024-09-18に公開中

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