5QS0
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z274555794
Experimental procedure
| 実験手法 | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-23 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| 格子定数 [Å] | 59.846, 59.846, 110.282 |
| 格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
| 残基 | 52.660 - 1.600 |
| R因子 | 0.2212 |
| Rwork | 0.220 |
| R-free | 0.24620 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| 結合長の平均二乗偏差(RMSD) [Å] | 0.009 |
| 結合角の平均二乗偏差(RMSD) [度] | 1.631 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Quality characteristics
| Overall | Inner shell | Outer shell | |
| 分解能 [Å] (低) | 55.130 | 55.130 | 1.640 |
| 分解能 [Å] (高) | 1.600 | 7.160 | 1.600 |
| Rmerge_l_obs | 0.087 | 0.063 | 1.754 |
| Rmeas | 0.091 | 0.067 | 1.852 |
| Rpim | 0.026 | 0.020 | 0.588 |
| Total number of observations | 325691 | 3971 | 19272 |
| 独立反射数 | 27286 | ||
| <I/σ(I)> | 12.7 | 31.5 | 1.1 |
| 完全性 [%] | 100.0 | 99.9 | 99.9 |
| 冗長性 | 11.9 | 10.1 | 9.9 |
| CC(1/2) | 0.998 | 0.998 | 0.748 |
結晶化条件
| 結晶ID | 方法 | pH | 温度 | 溶液条件 |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
