5QRV
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z198194396
Experimental procedure
| 実験手法 | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| 格子定数 [Å] | 60.020, 60.020, 110.050 |
| 格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
| 残基 | 40.590 - 1.670 |
| R因子 | 0.222 |
| Rwork | 0.221 |
| R-free | 0.25150 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| 結合長の平均二乗偏差(RMSD) [Å] | 0.009 |
| 結合角の平均二乗偏差(RMSD) [度] | 1.621 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Quality characteristics
| Overall | Inner shell | Outer shell | |
| 分解能 [Å] (低) | 40.560 | 40.560 | 1.710 |
| 分解能 [Å] (高) | 1.670 | 7.470 | 1.670 |
| Rmerge_l_obs | 0.073 | 0.042 | 2.338 |
| Rmeas | 0.077 | 0.044 | 2.441 |
| Rpim | 0.022 | 0.013 | 0.694 |
| Total number of observations | 305930 | 3611 | 21229 |
| 独立反射数 | 24137 | ||
| <I/σ(I)> | 16.4 | 47.9 | 1.3 |
| 完全性 [%] | 99.9 | 99.5 | 99.8 |
| 冗長性 | 12.7 | 10.6 | 12.2 |
| CC(1/2) | 0.999 | 0.999 | 0.741 |
結晶化条件
| 結晶ID | 方法 | pH | 温度 | 溶液条件 |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
