5QRP
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z2442270563
Experimental procedure
| 実験手法 | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-15 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| 格子定数 [Å] | 60.260, 60.260, 109.996 |
| 格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
| 残基 | 60.260 - 1.670 |
| R因子 | 0.2261 |
| Rwork | 0.225 |
| R-free | 0.25450 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| 結合長の平均二乗偏差(RMSD) [Å] | 0.007 |
| 結合角の平均二乗偏差(RMSD) [度] | 1.477 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Quality characteristics
| Overall | Inner shell | Outer shell | |
| 分解能 [Å] (低) | 109.980 | 109.980 | 1.710 |
| 分解能 [Å] (高) | 1.670 | 7.470 | 1.670 |
| Rmerge_l_obs | 0.094 | 0.061 | 1.825 |
| Rmeas | 0.098 | 0.064 | 1.900 |
| Rpim | 0.028 | 0.019 | 0.526 |
| Total number of observations | 305867 | 3688 | 22747 |
| 独立反射数 | 24349 | ||
| <I/σ(I)> | 11.6 | 32.8 | 1.2 |
| 完全性 [%] | 100.0 | 99.8 | 100 |
| 冗長性 | 12.6 | 10.6 | 12.9 |
| CC(1/2) | 0.998 | 0.996 | 0.859 |
結晶化条件
| 結晶ID | 方法 | pH | 温度 | 溶液条件 |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
