4R44
Racemic crystal structure of a tetramolecular DNA G-quadruplex
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-26 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P -1 |
格子定数 [Å] | 38.940, 39.000, 84.080 |
格子定数 [度] | 103.34, 103.37, 90.04 |
精密化法
残基 | 37.886 - 2.695 |
R因子 | 0.29544 |
Rwork | 0.294 |
R-free | 0.32532 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 352d |
結合長の平均二乗偏差(RMSD) [Å] | 0.007 |
結合角の平均二乗偏差(RMSD) [度] | 1.405 |
Data reduction software | CrystalClear |
Data scaling software | CrystalClear |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 37.886 | 2.790 |
分解能 [Å] (高) | 2.695 | 2.695 |
Rmerge_l_obs | 0.164 | 0.434 |
独立反射数 | 12597 | |
<I/σ(I)> | 1.7 | 1.6 |
完全性 [%] | 97.7 | 97.34 |
冗長性 | 1.7 | 1.6 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 293 | 1 mM DNA, 50 mM potassium cacodylate, 40 mM potassium chloride, 100 mM magnesium chloride hexahydrate, 1.7 M 1,6-hexanediol, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K |