2DLF
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU ULTRAX 18 |
Temperature [K] | 112 |
Detector technology | IMAGE PLATE |
Collection date | 1998-07-10 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 21 21 21 |
格子定数 [Å] | 57.290, 66.930, 53.630 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 8.000 - 1.550 |
R因子 | 0.179 * |
Rwork | 0.184 |
R-free | 0.22800 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1igf |
結合長の平均二乗偏差(RMSD) [Å] | 0.008 |
結合角の平均二乗偏差(RMSD) [度] | 27.390 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.1) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 40.000 | 1.520 |
分解能 [Å] (高) | 1.550 * | 1.550 * |
Rmerge_l_obs | 0.052 * | 0.318 |
Total number of observations | 331744 * | |
独立反射数 | 29973 * | |
<I/σ(I)> | 42.6 | 3.5 |
完全性 [%] | 97.7 * | 96.3 * |
冗長性 | 11.1 | 5.4 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, HANGING DROP | 6.75 | 293 * | CRYSTALLIZATION CONDITIONS: TEMPERATURE AT 20C. PRECIPITANT SOLUTION CONTAINED 1 AMMONIUM SULFATE AND 0.025 M SODIUM CACODYLATE (PH 6.75). 5 MG/ML OF FV FRAGMENT., VAPOR DIFFUSION, HANGING DROP |
文献の結晶化試薬
ID | 結晶ID | 溶液 | 試薬名 | 濃度 (単位) (単位) | 詳細 |
1 | 1 | drop | protein | 5 (mg/ml) | |
2 | 1 | drop | ammonium sulfate | 0.8 (M) | |
3 | 1 | drop | sodium cacodylate | 25 (mM) | |
4 | 1 | reservoir | ammonium sulfate | 1.6 (M) | |
5 | 1 | reservoir | sodium cacodylate | 25 (mM) |