1VPN
UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER
Experimental procedure
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 1994-12 |
Detector | FUJI |
Spacegroup name | P 31 2 1 |
格子定数 [Å] | 221.500, 221.500, 99.800 |
格子定数 [度] | 90.00, 90.00, 120.00 |
精密化法
残基 | 20.000 - 2.000 |
R因子 | 0.176 |
Rwork | 0.176 |
R-free | 0.19900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | POLYOMAVIRUS VP1 PENTAMER (PDB ENTRY 1SID) |
結合長の平均二乗偏差(RMSD) [Å] | 0.008 |
結合角の平均二乗偏差(RMSD) [度] | 1.360 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.1) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 25.000 | 2.100 |
分解能 [Å] (高) | 2.000 | 2.000 |
Rmerge_l_obs | 0.106 * | |
独立反射数 | 172107 | |
<I/σ(I)> | 14.9 | 2.1 |
完全性 [%] | 83.2 | 62.2 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | Vapor diffusion, hanging drop * | 8 | DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL |
文献の結晶化試薬
ID | 結晶ID | 溶液 | 試薬名 | 濃度 (単位) (単位) | 詳細 |
1 | 1 | drop | ammonium phosphate | 1.0 (M) | |
2 | 1 | drop | ethanol | 2.5 (%) | |
3 | 1 | drop | protein | 8-10 (mg/ml) | |
4 | 1 | reservoir | ammonium phosphate | 2.0 (M) | |
5 | 1 | reservoir | ethanol | 5 (%) |