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Legacy flatfile-incompatible PDB entries
7NCX
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BU of 7ncx by Molmil
Crystal structure of GH30 (double mutant EE) from Thermothelomyces thermophila.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Dimarogona, M, Nikolaivits, E, Topakas, E, Weiss, M, Feiler, C.G.
Deposit date:2021-01-29
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Unique features of the bifunctional GH30 from Thermothelomyces thermophila revealed by structural and mutational studies
Carbohydrate Polymers, 273, 2021
7NDQ
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BU of 7ndq by Molmil
Gag:02 TCR in complex with HLA-E.
Descriptor: Beta-2-microglobulin, Gag6V, HLA class I histocompatibility antigen, ...
Authors:Pengelly, R.J, Robinson, R.A.
Deposit date:2021-02-02
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
7NDT
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BU of 7ndt by Molmil
UL40:01 TCR in complex with HLA-E with a non-natural amino acid
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain E, ...
Authors:Pengelly, R.J, Robinson, R.A.
Deposit date:2021-02-02
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
7NDU
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BU of 7ndu by Molmil
Gag:02 TCR in complex with HLA-E featuring a non-natural amino acid
Descriptor: Beta-2-microglobulin, Gag6V(276-284 H4C), HLA class I histocompatibility antigen, ...
Authors:Pengelly, R.J, Robinson, R.A.
Deposit date:2021-02-02
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
7NE9
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BU of 7ne9 by Molmil
A single sensor controls large variations in zinc quotas in a marine cyanobacterium
Descriptor: ACETATE ION, Ferric uptake regulator family, ZINC ION
Authors:Fulop, V.
Deposit date:2021-02-03
Release date:2022-03-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A single sensor controls large variations in zinc quotas in a marine cyanobacterium.
Nat.Chem.Biol., 18, 2022
7NEO
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BU of 7neo by Molmil
Crystal Structure of SARS-CoV-2 main protease (Nsp5) in complex with compound 15
Descriptor: 2-cyclobutyl-7-(5-fluoropyridin-3-yl)-5,7-diazaspiro[3.4]octane-6,8-dione, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
Authors:Talibov, V.O.
Deposit date:2021-02-04
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses.
J.Am.Chem.Soc., 144, 2022
7NFV
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BU of 7nfv by Molmil
Structure of SARS-CoV-2 Papain-like protease PLpro
Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Srinivasan, V, Gunther, S, Reinke, P, Werner, N, Falke, S, Brognaro, H, Ullah, N, Andaleeb, H, Perbandt, M, Alves Franca, B, Schwinzer, M, Wang, M, Sprenger, J, Lieske, J, Ginn, H, Lane, T.J, Yefanov, O, Gelisio, L, Koua, F, Saouane, S, Tolstikova, A, Groessler, M, Fleckenstein, H, Ewert, W, Trost, F, Lorenzen, K, Schubert, R, Han, H, Schmidt, C, Brings, L, Ehrt, C, Rarey, M, Galchenkova, M, Gevorkov, Y, Li, C, Perk, A, Awel, S, Hinrichs, W, Meents, A, Betzel, C.
Deposit date:2021-02-07
Release date:2021-02-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Antiviral activity of natural phenolic compounds in complex at an allosteric site of SARS-CoV-2 papain-like protease.
Commun Biol, 5, 2022
7NFX
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BU of 7nfx by Molmil
Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A
Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Jomaa, A, Lee, J.H, Shan, S, Ban, N.
Deposit date:2021-02-08
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Receptor compaction and GTPase rearrangement drive SRP-mediated cotranslational protein translocation into the ER.
Sci Adv, 7, 2021
7NG8
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BU of 7ng8 by Molmil
Trimeric efflux pump Klebsiella TolC in complex with KlebC
Descriptor: Klebicin C activity, Outer membrane channel protein
Authors:Webby, M.N, Housden, N.G, Kleanthous, C.
Deposit date:2021-02-08
Release date:2021-06-30
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Toxin import through the antibiotic efflux channel TolC.
Nat Commun, 12, 2021
7NH3
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BU of 7nh3 by Molmil
Nematocida Huwe1 in open conformation.
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Petrova, O, Grishkovskaya, I, Grabarczyk, D.B, Kessler, D, Haselbach, D, Clausen, T.
Deposit date:2021-02-09
Release date:2022-03-02
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (6.37 Å)
Cite:Crystal structure of HUWE1: One ring to ubiquitinate them all
To Be Published
7NH6
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BU of 7nh6 by Molmil
Crystal structure of human carbonic anhydrase II with 3-(3-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methyl)ureido)benzenesulfonamide
Descriptor: 3-(3-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methyl)ureido)benzenesulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2021-02-10
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Mechanisms of the Antiproliferative and Antitumor Activity of Novel Telomerase-Carbonic Anhydrase Dual-Hybrid Inhibitors.
J.Med.Chem., 64, 2021
7NH8
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BU of 7nh8 by Molmil
Crystal structure of human carbonic anhydrase II with N-((1-(6-((3aR,7R,7aS)-7-hydroxy-2,2-dimethyltetrahydro-[1,3]dioxolo[4,5-c]pyridin-5(4H)-yl)hexyl)-1H-1,2,3-triazol-4-yl)methyl)-4-sulfamoylbenzamide
Descriptor: Carbonic anhydrase 2, N-((1-(6-((3aR,7R,7aS)-7-hydroxy-2,2-dimethyltetrahydro-[1,3]dioxolo[4,5-c]pyridin-5(4H)-yl)hexyl)-1H-1,2,3-triazol-4-yl)methyl)-4-sulfamoylbenzamide, ZINC ION
Authors:Angeli, A, Ferraroni, M.
Deposit date:2021-02-10
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.369 Å)
Cite:Synthesis of Azasugar-Sulfonamide conjugates and their Evaluation as Inhibitors of Carbonic Anhydrases: the Azasugar Approach to Selectivity
Eur.J.Org.Chem., 2021
7NHK
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BU of 7nhk by Molmil
LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
Authors:Crowe-McAuliffe, C, Kasari, M, Hauryliuk, V.H, Wilson, D.N.
Deposit date:2021-02-10
Release date:2021-05-05
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
Nat Commun, 12, 2021
7NHL
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BU of 7nhl by Molmil
VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Crowe-McAuliffe, C, Murina, V, Hauryliuk, V, Wilson, D.N.
Deposit date:2021-02-10
Release date:2021-05-05
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
Nat Commun, 12, 2021
7NHM
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BU of 7nhm by Molmil
70S ribosome from Staphylococcus aureus
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Crowe-McAuliffe, C, Murina, V, Hauryliuk, V, Wilson, D.N.
Deposit date:2021-02-10
Release date:2021-05-05
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
Nat Commun, 12, 2021
7NHN
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BU of 7nhn by Molmil
VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Crowe-McAuliffe, C, Turnbull, K.J, Hauryliuk, V, Wilson, D.N.
Deposit date:2021-02-10
Release date:2021-05-05
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens.
Nat Commun, 12, 2021
7NKT
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BU of 7nkt by Molmil
RBD domain of SARS-CoV2 in complex with neutralizing nanobody NM1226
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
Authors:Ostertag, E, Zocher, G, Stehle, T.
Deposit date:2021-02-18
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:NeutrobodyPlex-monitoring SARS-CoV-2 neutralizing immune responses using nanobodies.
Embo Rep., 22, 2021
7NLV
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BU of 7nlv by Molmil
WILDTYPE CORE-STREPTAVIDIN WITH a conjugated BIOTINYLATED PYRROLIDINE II
Descriptor: 5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)-N-((S)-pyrrolidin-3-yl)pentanamide, Streptavidin
Authors:Nodling, A.R, Santi, N, Tsai, Y.H, Rizkallah, P, Luk, L.Y.P, Jin, Y.
Deposit date:2021-02-22
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:The role of streptavidin and its variants in catalysis by biotinylated secondary amines.
Org.Biomol.Chem., 19, 2021
7NM7
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BU of 7nm7 by Molmil
The crystal structure of the antimycin pathway standalone ketoreductase, AntM
Descriptor: Antimycin pathway standalone ketoreductase enzyme, AntM
Authors:Fazal, A, Hemsworth, G.R, Webb, M.E, Seipke, R.F.
Deposit date:2021-02-23
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Standalone beta-Ketoreductase Acts Concomitantly with Biosynthesis of the Antimycin Scaffold.
Acs Chem.Biol., 16, 2021
7NM8
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BU of 7nm8 by Molmil
The crystal structure of the antimycin pathway standalone ketoreductase, AntM, in complex with NADPH
Descriptor: Antimycin pathway standalone ketoreductase, AntM, GLYCEROL, ...
Authors:Fazal, A, Hemsworth, G.R, Webb, M.E, Seipke, R.F.
Deposit date:2021-02-23
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Standalone beta-Ketoreductase Acts Concomitantly with Biosynthesis of the Antimycin Scaffold.
Acs Chem.Biol., 16, 2021
7NMC
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BU of 7nmc by Molmil
Crystal structure of beta-2-microglobulin D76E mutant
Descriptor: Beta-2-microglobulin, GLYCEROL, TRIETHYLENE GLYCOL
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7NMO
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BU of 7nmo by Molmil
Crystal structure of beta-2-microglobulin D76A mutant
Descriptor: Beta-2-microglobulin
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7NMR
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BU of 7nmr by Molmil
Crystal structure of beta-2-microglobulin D76S mutant
Descriptor: Beta-2-microglobulin, GLYCEROL
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7NMT
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BU of 7nmt by Molmil
Crystal structure of beta-2-microglobulin D76G mutant
Descriptor: Beta-2-microglobulin
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7NMU
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BU of 7nmu by Molmil
Crystal structure of human platelet glycoprotein VI in complex with an inhibitory nanobody.
Descriptor: CALCIUM ION, Nanobody 2, Platelet glycoprotein VI
Authors:Slater, A, Jonas, E, Watson, S.P.
Deposit date:2021-02-23
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of a novel GPVI-nanobody complex reveals a biologically active domain-swapped GPVI dimer.
Blood, 137, 2021

222415

數據於2024-07-10公開中

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