Legacy flatfile-incompatible PDB entries

7PI5	Unstacked stretched Dunaliella PSII Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate, ... Authors: Caspy, I, Fadeeva, M, Mazor, Y, Nelson, N. Deposit date: 2021-08-19 Release date: 2022-08-17 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (2.78 Å) Cite: Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes. Elife, 12, 2023
7PI8	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-19 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PI9	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-19 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (6.3 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIA	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-19 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (13.6 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIB	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-19 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIC	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-19 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.1 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIL	Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A Descriptor: (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate, 1,2-Distearoyl-sn-glycerophosphoethanolamine, BACTERIOCHLOROPHYLL A, ... Authors: Qian, P, Hunter, C.N. Deposit date: 2021-08-20 Release date: 2021-10-13 Last modified: 2021-11-03 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Cryo-EM structure of the monomeric Rhodobacter sphaeroides RC-LH1 core complex at 2.5 angstrom. Biochem.J., 478, 2021
7PIN	Stacked compact Dunaliella PSII Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate, ... Authors: Caspy, I, Fadeeva, M, Mazor, Y, Nelson, N. Deposit date: 2021-08-22 Release date: 2022-08-17 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes. Elife, 12, 2023
7PIO	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.5 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIP	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.3 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIQ	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIR	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (12.1 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIS	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (15 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIT	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-08-23 Release date: 2022-05-25 Last modified: 2022-11-23 Method: ELECTRON MICROSCOPY (5.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIW	Stacked stretched Dunaliella PSII Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate, ... Authors: Caspy, I, Fadeeva, M, Mazor, Y, Nelson, N. Deposit date: 2021-08-23 Release date: 2022-08-17 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes. Elife, 12, 2023
7PJ3	Crystal structure of catalytic domain in open conformation of LytB from Streptococcus pneumoniae Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ... Authors: Martinez Caballero, S, Hermoso, J.A. Deposit date: 2021-08-23 Release date: 2022-09-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep, 42, 2023
7PJ4	Crystal structure of catalytic domain in closed conformation of LytB (E585Q)from Streptococcus pneumoniae Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Martinez Caballero, S, Hermoso, J.A. Deposit date: 2021-08-23 Release date: 2022-09-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep, 42, 2023
7PJ5	Crystal structure of catalytic domain of LytB from Streptococcus pneumoniae in complex with NAG-NAG-NAG-NAG tetrasaccharide Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Martinez Caballero, S, Hermoso, J.A. Deposit date: 2021-08-23 Release date: 2022-09-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep, 42, 2023
7PJ6	Crystal structure of catalytic domain of LytB (E585Q) from Streptococcus pneumoniae in complex with NAG-NAM-NAG-NAM-NAG peptidolycan analogue Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Martinez Caballero, S, Hermoso, J.A. Deposit date: 2021-08-23 Release date: 2022-09-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep, 42, 2023
7PJO	Crystal form 3 of CPR-C4: a cysteine protease from the Candidate Phyla Radiation Descriptor: CPR-C4, PHOSPHATE ION Authors: Cornish, K.A.S, Pohl, E. Deposit date: 2021-08-24 Release date: 2022-07-06 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.248 Å) Cite: CPR-C4 is a highly conserved novel protease from the Candidate Phyla Radiation with remote structural homology to human vasohibins. J.Biol.Chem., 298, 2022
7PJS	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.35 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement Nat Commun, 12, 2021
7PJT	Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (6 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7PJU	Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-11-17 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (9.5 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7PJV	Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7PJW	Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021

<110111112113114115116117118119120121122123124125>