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PDB形式変換不可の PDB エントリー
7L5U
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The full AAV7 capsid
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-22
公開日2021-02-03
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6A
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BU of 7l6a by Molmil
The genome-containing AAV12 capsid
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, VP1
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6B
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The empty AAV12 capsid
分子名称: VP1
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.54 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6E
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BU of 7l6e by Molmil
The genome-containing AAV11 capsid
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6F
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BU of 7l6f by Molmil
The empty AAV11 capsid
分子名称: Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6H
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BU of 7l6h by Molmil
The genome-containing AAV13 capsid
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L6I
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BU of 7l6i by Molmil
The empty AAV13 capsid
分子名称: Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-12-23
公開日2021-02-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features.
Viruses, 13, 2021
7L7X
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X-ray structure of the Pcryo_0638 aminotransferase from Psychrobacter cryohalolentis
分子名称: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, DegT/DnrJ/EryC1/StrS aminotransferase, ...
著者Linehan, M.P, Thoden, J.B, Holden, H.M.
登録日2020-12-30
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
7L7Y
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x-ray structure of the N-acetyltransferase Pcryo_0637 from psychrobacter cryohalolentis in the presence of UDP and acetyl-conezyme A
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETYL COENZYME *A, CHLORIDE ION, ...
著者Linehan, M.P, Thoden, J.B, Holden, H.M.
登録日2020-12-30
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
7L7Z
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x-ray structure of the N-acetyltransferase Pcryo_0637 from psychrobacter cryohalolentis in the presence of coenzyme A and UDP-di-N-acetyl-bacillosamine
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, COENZYME A, ...
著者Linehan, M.P, Thoden, J.B, Holden, H.M.
登録日2020-12-30
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
7L81
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x-ray structure of the psychrobacter cryohalolentis N-acetyltransferase Pcryo_0637 in the presence of coenzyme A and
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, COENZYME A, ...
著者Linehan, M.P, Thoden, J.B, Holden, H.M.
登録日2020-12-30
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
7L82
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BU of 7l82 by Molmil
x-ray structure of the psychrobacter cryohalolentis Pcryo_0637 N-acetyltransferase in the presene of its reaction tetrahedral intermediate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Putative acetyl transferase protein, ...
著者Linehan, M.P, Thoden, J.B, Holden, H.M.
登録日2020-12-30
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
7L8F
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BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-2 from animal Rh.33172 (Wk38 time point)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
著者Antanasijevic, A, Sewall, L.M, Ward, A.B.
登録日2020-12-31
公開日2021-08-04
最終更新日2021-09-08
実験手法ELECTRON MICROSCOPY (3.66 Å)
主引用文献Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM.
Nat Commun, 12, 2021
7LBM
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BU of 7lbm by Molmil
Structure of the human Mediator-bound transcription pre-initiation complex
分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
著者Abdella, R, Talyzina, A, He, Y.
登録日2021-01-08
公開日2021-03-24
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Structure of the human Mediator-bound transcription preinitiation complex.
Science, 372, 2021
7LER
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BU of 7ler by Molmil
Netrin-1 filament assembly
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Netrin-1, ...
著者McDougall, M, Gupta, M, Stetefeld, J.
登録日2021-01-14
公開日2022-02-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (5.99 Å)
主引用文献The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation.
Nat Commun, 14, 2023
7LH5
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BU of 7lh5 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
分子名称: (2S)-4-amino-N-[(1R,2S,3S,4R,5S)-5-amino-4-{[(2S,3R)-3-amino-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-y l]oxy}-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-2-hydroxybutanamide, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Golkar, T, Berghuis, A.M, Schmeing, T.M.
登録日2021-01-21
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.27 Å)
主引用文献Structural basis for plazomicin antibiotic action and resistance.
Commun Biol, 4, 2021
7LHD
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The complete model of phage Qbeta virion
分子名称: Capsid protein, Genomic RNA, Maturation protein A2
著者Chang, J.Y, Zhang, J.
登録日2021-01-22
公開日2022-01-26
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structural Assembly of Q beta Virion and Its Diverse Forms of Virus-like Particles.
Viruses, 14, 2022
7LKI
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BU of 7lki by Molmil
The crystal structure of Epitope III of HCV envelop protein E2 in complex with antibody 1H8
分子名称: Epitope III peptide GLY-ALA-PRO-THR-TYR-SER-TRP-GLY, antibody 1H8 heavy chain, antibody 1H8 light chain
著者Deng, L, Zhang, P.
登録日2021-02-02
公開日2021-08-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A conserved epitope III on hepatitis C virus E2 protein has alternate conformations facilitating cell binding or virus neutralization.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LMG
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BU of 7lmg by Molmil
SARS-CoV-1 3CLPro in complex with N-(4-(1H-imidazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(thiophen-3-ylmethyl)acetamide
分子名称: 2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
著者Arya, T, Goins, C.M, Macdonald, J.D, Stauffer, S.R.
登録日2021-02-05
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Based Optimization of ML300-Derived, Noncovalent Inhibitors Targeting the Severe Acute Respiratory Syndrome Coronavirus 3CL Protease (SARS-CoV-2 3CL pro ).
J.Med.Chem., 65, 2022
7LMH
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SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(4-(pyridin-3-yl)phenyl)-N-(thiophen-3-ylmethyl)acetamide
分子名称: 2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-~{N}-(thiophen-3-ylmethyl)ethanamide, 3C-like proteinase, GLYCEROL
著者Arya, T, Goins, C.M, Macdonald, J.D, Stauffer, S.R.
登録日2021-02-05
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure-Based Optimization of ML300-Derived, Noncovalent Inhibitors Targeting the Severe Acute Respiratory Syndrome Coronavirus 3CL Protease (SARS-CoV-2 3CL pro ).
J.Med.Chem., 65, 2022
7LMI
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SARS-CoV-1 3CLPro in complex with N-(4-(1H-pyrazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(thiophen-3-ylmethyl)acetamide
分子名称: 2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-pyrazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide, 3C-like proteinase, GLYCEROL
著者Arya, T, Goins, C.M, Macdonald, J.D, Stauffer, S.R.
登録日2021-02-05
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Structure-Based Optimization of ML300-Derived, Noncovalent Inhibitors Targeting the Severe Acute Respiratory Syndrome Coronavirus 3CL Protease (SARS-CoV-2 3CL pro ).
J.Med.Chem., 65, 2022
7LMJ
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BU of 7lmj by Molmil
SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(3-chlorobenzyl)-N-(4-(2-oxo-1,2-dihydropyridin-3-yl)phenyl)acetamide
分子名称: 2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl]-~{N}-[4-(2-oxidanylidene-1~{H}-pyridin-3-yl)phenyl]ethanamide, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
著者Arya, T, Goins, C.M, Macdonald, J.D, Stauffer, S.R.
登録日2021-02-05
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.686 Å)
主引用文献Structure-Based Optimization of ML300-Derived, Noncovalent Inhibitors Targeting the Severe Acute Respiratory Syndrome Coronavirus 3CL Protease (SARS-CoV-2 3CL pro ).
J.Med.Chem., 65, 2022
7LNK
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BU of 7lnk by Molmil
Gorilla Bocavirus 1 Capsid
分子名称: Capsid protein
著者Yu, J.C, Mietzsch, M, Agbandje-McKenna, M.
登録日2021-02-07
公開日2021-03-17
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Characterization of the GBoV1 Capsid and Its Antibody Interactions.
Viruses, 13, 2021
7LQE
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Cryo-EM of 1-protofilament of the KFE8 thinner nanotube
分子名称: KFE8 peptide
著者Wang, F, Gnewou, O.M, Egelman, E.H, Conticello, V.P.
登録日2021-02-13
公開日2021-06-30
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Deterministic chaos in the self-assembly of beta sheet nanotubes from an amphipathic oligopeptide.
Matter, 4, 2021
7LQF
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Cryo-EM of KFE8 ribbon filament
分子名称: KFE8 peptide
著者Wang, F, Gnewou, O.M, Egelman, E.H, Conticello, V.P.
登録日2021-02-13
公開日2021-06-30
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Deterministic chaos in the self-assembly of beta sheet nanotubes from an amphipathic oligopeptide.
Matter, 4, 2021

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件を2024-09-04に公開中

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