Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

PDBエントリー1p8jのentity_id 4番と7番について、entity_id、label_asym_id(PDBで規定したChainID)、auth_asym_id(登録者が定義したChainID)、配列(chem_comp_id 表記をハイフンでつないだ値)を得る

検索はこちら

WITH chain(pdbid,entity_id,label_asym_id) AS
(SELECT e1.pdbid, e1.entity_id, e1.id AS label_asym_id 
 FROM struct_asym AS e1
 WHERE e1.pdbid='1p8j'
 AND (e1.entity_id='4' OR e1.entity_id='7'))
SELECT chain.entity_id, 
substring(string_agg(chain.label_asym_id,'-') from '^[0-9A-Za-z]+') label_asym_id,
substring(string_agg(e2.pdb_strand_id,'-') from '^[0-9A-Za-z]+') auth_asym_id, 
string_agg(e2.mon_id,'-') AS sequence 
FROM pdbx_nonpoly_scheme AS e2
JOIN chain ON chain.pdbid = e2.pdbid AND chain.label_asym_id=e2.asym_id
GROUP BY chain.entity_id

作成日: 2018-04-23 (最終更新日: more than 1 year ago)2018-04-23

246704

件を2025-12-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon