- PDB-5bt2: MeCP2 MBD domain (A140V) in complex with methylated DNA -
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Basic information
Entry
Database: PDB / ID: 5bt2
Title
MeCP2 MBD domain (A140V) in complex with methylated DNA
Components
DNA (5'-D(*AP*TP*AP*GP*AP*AP*GP*AP*AP*TP*TP*CP*(5CM)P*GP*TP*TP*CP*CP*AP*G)-3')
DNA (5'-D(*TP*CP*TP*GP*GP*AP*AP*(5CM)P*GP*GP*AP*AP*TP*TP*CP*TP*TP*CP*TP*A)-3')
Methyl-CpG-binding protein 2
Keywords
DNA BINDING PROTEIN/DNA / A/T run / MeCP2 / hydration spine / methylated DNA / DNA BINDING PROTEIN-DNA complex
Function / homology
Function and homology information
trans-synaptic signaling by BDNF / regulation of action potential firing threshold / negative regulation of respiratory gaseous exchange / Loss of MECP2 binding ability to 5hmC-DNA / cellular response to isoquinoline alkaloid / positive regulation of anterograde dense core granule transport / positive regulation of retrograde dense core granule transport / positive regulation of branching morphogenesis of a nerve / catecholamine secretion / MECP2 regulates transcription of genes involved in GABA signaling ...trans-synaptic signaling by BDNF / regulation of action potential firing threshold / negative regulation of respiratory gaseous exchange / Loss of MECP2 binding ability to 5hmC-DNA / cellular response to isoquinoline alkaloid / positive regulation of anterograde dense core granule transport / positive regulation of retrograde dense core granule transport / positive regulation of branching morphogenesis of a nerve / catecholamine secretion / MECP2 regulates transcription of genes involved in GABA signaling / biogenic amine metabolic process / principal sensory nucleus of trigeminal nerve development / cardiolipin metabolic process / negative regulation of dendrite extension / negative regulation of locomotion involved in locomotory behavior / MECP2 regulates transcription factors / Loss of MECP2 binding ability to 5mC-DNA / nervous system process involved in regulation of systemic arterial blood pressure / proprioception / negative regulation of primary miRNA processing / MECP2 regulates transcription of neuronal ligands / negative regulation of smooth muscle cell differentiation / Loss of MECP2 binding ability to the NCoR/SMRT complex / negative regulation of dendritic spine development / Transcriptional Regulation by MECP2 / regulation of respiratory gaseous exchange by nervous system process / double-stranded methylated DNA binding / ventricular cardiac muscle tissue development / inositol metabolic process / genomic imprinting / phosphatidylcholine metabolic process / thalamus development / positive regulation of microtubule nucleation / glucocorticoid metabolic process / ventricular system development / cellular response to potassium ion / unmethylated CpG binding / positive regulation of synaptic plasticity / respiratory gaseous exchange by respiratory system / oligodendrocyte development / olfactory bulb development / positive regulation of dendrite extension / striatum development / response to other organism / siRNA binding / neuron maturation / methyl-CpG binding / negative regulation of blood vessel endothelial cell migration / Loss of phosphorylation of MECP2 at T308 / negative regulation of gene expression via chromosomal CpG island methylation / response to ionizing radiation / spinal cord development / positive regulation of dendritic spine development / lung alveolus development / regulation of synapse organization / histone reader activity / glutamine metabolic process / startle response / dendrite development / positive regulation of glial cell proliferation / social behavior / Regulation of MECP2 expression and activity / negative regulation of astrocyte differentiation / behavioral fear response / glial cell proliferation / heterochromatin / long-term memory / Nuclear events stimulated by ALK signaling in cancer / negative regulation of angiogenesis / MECP2 regulates neuronal receptors and channels / four-way junction DNA binding / Notch signaling pathway / sensory perception of pain / synapse assembly / cerebellum development / adult locomotory behavior / excitatory postsynaptic potential / post-embryonic development / molecular condensate scaffold activity / response to cocaine / promoter-specific chromatin binding / hippocampus development / long-term synaptic potentiation / response to lead ion / visual learning / heterochromatin formation / chromatin DNA binding / cerebral cortex development / histone deacetylase binding / transcription corepressor activity / protein localization / response to estradiol / gene expression / nucleic acid binding / negative regulation of neuron apoptotic process / postsynapse / molecular adaptor activity / response to hypoxia / protein domain specific binding / negative regulation of gene expression Similarity search - Function
Methyl-CpG binding protein MeCP2 / Methyl-cpg-binding Protein 2; Chain A / Methyl-cpg-binding Protein 2; Chain A / Methyl-CpG binding protein MeCP2/MBD4 / Methyl-CpG binding domain / Methyl-CpG DNA binding / Methyl-CpG binding domain / Methyl-CpG-binding domain (MBD) profile. / DNA-binding domain superfamily / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
A: Methyl-CpG-binding protein 2 B: DNA (5'-D(*TP*CP*TP*GP*GP*AP*AP*(5CM)P*GP*GP*AP*AP*TP*TP*CP*TP*TP*CP*TP*A)-3') C: DNA (5'-D(*AP*TP*AP*GP*AP*AP*GP*AP*AP*TP*TP*CP*(5CM)P*GP*TP*TP*CP*CP*AP*G)-3')
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