+Open data
-Basic information
Entry | Database: PDB / ID: 4tna | |||||||||
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Title | FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | |||||||||
Components | TRNAPHE | |||||||||
Keywords | T-RNA / SINGLE STRAND / LOOPS | |||||||||
Function / homology | RNA / RNA (> 10) Function and homology information | |||||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | |||||||||
Authors | Hingerty, B.E. / Brown, R.S. / Jack, A. | |||||||||
Citation | Journal: J.Mol.Biol. / Year: 1978 Title: Further refinement of the structure of yeast tRNAPhe. Authors: Hingerty, B. / Brown, R.S. / Jack, A. #1: Journal: Acta Crystallogr.,Sect.A / Year: 1978 Title: Refinement of Large Structures by Simultaneous Minimization of Energy and R Factor Authors: Jack, A. / Levitt, M. #2: Journal: J.Mol.Biol. / Year: 1977 Title: A Crystallographic Study of Metal-Binding to Yeast Phenylalanine Transfer RNA Authors: Jack, A. / Ladner, J.E. / Rhodes, D. / Brown, R.S. / Klug, A. #3: Journal: J.Mol.Biol. / Year: 1976 Title: Crystallographic Refinement of Yeast Phenylalanine Transfer RNA at 2.5 Angstroms Resolution Authors: Jack, A. / Ladner, J.E. / Klug, A. #4: Journal: Nucleic Acids Res. / Year: 1975 Title: Atomic Coordinates for Yeast Phenylalanine T-RNA Authors: Ladner, J.E. / Jack, A. / Robertus, J.D. / Brown, R.S. / Rhodes, D. / Clark, B.F.C. / Klug, A. #5: Journal: Nature / Year: 1974 Title: Structure of Yeast Phenylalanine T-RNA at 3 Angstroms Resolution Authors: Robertus, J.D. / Ladner, J.E. / Finch, J.T. / Rhodes, D. / Brown, R.S. / Clark, B.F.C. / Klug, A. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4tna.cif.gz | 58.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4tna.ent.gz | 36.2 KB | Display | PDB format |
PDBx/mmJSON format | 4tna.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tn/4tna ftp://data.pdbj.org/pub/pdb/validation_reports/tn/4tna | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: RNA chain | Mass: 24890.121 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae (brewer's yeast) |
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#2: Chemical | ChemComp-MG / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.38 Å3/Da / Density % sol: 48.31 % |
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Crystal grow | *PLUS Method: other / Details: Jack, A., (1976) J. Mol. Biol., 108, 619. |
-Data collection
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 8006 / Rmerge(I) obs: 0.057 |
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-Processing
Software | Name: JACK-LEVITT / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 2.5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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Refinement | *PLUS Highest resolution: 2.5 Å / Num. reflection obs: 8006 / Rfactor obs: 0.21 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |