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- PDB-6tna: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHI... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6tna | ||||||||||||
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Title | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT | ||||||||||||
![]() | TRNAPHE | ||||||||||||
![]() | T-RNA / SINGLE STRAND / LOOPS | ||||||||||||
Function / homology | RNA / RNA (> 10)![]() | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | ![]() | ||||||||||||
![]() | Sussman, J.L. / Holbrook, S.R. / Warrant, R.W. / Church, G.M. / Kim, S.-H. | ||||||||||||
![]() | ![]() Title: Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement. Authors: Sussman, J.L. / Holbrook, S.R. / Warrant, R.W. / Church, G.M. / Kim, S.H. #1: ![]() Title: Crystal Structure of Yeast Phenylalanine T-RNA. II.Structural Features and Functional Implications Authors: Holbrook, S.R. / Sussman, J.L. / Warrant, R.W. / Kim, S.-H. #2: ![]() Title: Three Dimensional Structure of T-RNA and Its Functional Implications Authors: Kim, S.-H. #3: ![]() Title: The Three-Dimensional Structure of Transfer RNA Authors: Rich, A. / Kim, S.H. #4: ![]() Title: Crystal Structure of Yeast Phenylalanine T-RNA, Its Correlation to the Solution Structure and the Functional Implications Authors: Kim, S.-H. #5: ![]() Title: RNA-Ligand Interactions. (1) Magnesium Binding Sites in Yeast T-RNA-PHE Authors: Holbrook, S.R. / Sussman, J.L. / Warrant, R.W. / Church, G.M. / Kim, S.-H. #6: ![]() Title: Idealized Atomic Coordinates of Yeast Phenylalanine Transfer RNA Authors: Sussman, J.L. / Kim, S.-H. #7: ![]() Title: Three-Dimensional Structure of a Transfer RNA in Two Crystal Forms Authors: Sussman, J.L. / Kim, S.-H. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 56.8 KB | Display | ![]() |
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PDB format | ![]() | 37.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 351.3 KB | Display | ![]() |
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Full document | ![]() | 372 KB | Display | |
Data in XML | ![]() | 7.2 KB | Display | |
Data in CIF | ![]() | 9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: RNA chain | Mass: 24890.121 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||
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#2: Chemical | ChemComp-MG / #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.99 Å3/Da / Density % sol: 58.84 % |
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Crystal grow | *PLUS Method: other / Details: Kim, S.H., (1971) Proc.Natl.Acad.Sci.USA, 68, 841. |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.7 Å / Num. all: 8741 / Num. obs: 8426 / % possible obs: 96.4 % / Observed criterion σ(F): 2 / Rmerge(I) obs: 0.39 |
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Processing
Software | Name: CORELS / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 2.7 Å /
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Refinement step | Cycle: LAST / Highest resolution: 2.7 Å
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Refinement | *PLUS Highest resolution: 2.7 Å | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |