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Open data
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Basic information
Entry | Database: PDB / ID: 4tna | |||||||||
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Title | FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | |||||||||
![]() | TRNAPHE | |||||||||
![]() | T-RNA / SINGLE STRAND / LOOPS | |||||||||
Function / homology | RNA / RNA (> 10)![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Hingerty, B.E. / Brown, R.S. / Jack, A. | |||||||||
![]() | ![]() Title: Further refinement of the structure of yeast tRNAPhe. Authors: Hingerty, B. / Brown, R.S. / Jack, A. #1: ![]() Title: Refinement of Large Structures by Simultaneous Minimization of Energy and R Factor Authors: Jack, A. / Levitt, M. #2: ![]() Title: A Crystallographic Study of Metal-Binding to Yeast Phenylalanine Transfer RNA Authors: Jack, A. / Ladner, J.E. / Rhodes, D. / Brown, R.S. / Klug, A. #3: ![]() Title: Crystallographic Refinement of Yeast Phenylalanine Transfer RNA at 2.5 Angstroms Resolution Authors: Jack, A. / Ladner, J.E. / Klug, A. #4: ![]() Title: Atomic Coordinates for Yeast Phenylalanine T-RNA Authors: Ladner, J.E. / Jack, A. / Robertus, J.D. / Brown, R.S. / Rhodes, D. / Clark, B.F.C. / Klug, A. #5: ![]() Title: Structure of Yeast Phenylalanine T-RNA at 3 Angstroms Resolution Authors: Robertus, J.D. / Ladner, J.E. / Finch, J.T. / Rhodes, D. / Brown, R.S. / Clark, B.F.C. / Klug, A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 58.8 KB | Display | ![]() |
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PDB format | ![]() | 36.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 373.2 KB | Display | ![]() |
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Full document | ![]() | 449.7 KB | Display | |
Data in XML | ![]() | 12.5 KB | Display | |
Data in CIF | ![]() | 15.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: RNA chain | Mass: 24890.121 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-MG / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.38 Å3/Da / Density % sol: 48.31 % |
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Crystal grow | *PLUS Method: other / Details: Jack, A., (1976) J. Mol. Biol., 108, 619. |
-Data collection
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 8006 / Rmerge(I) obs: 0.057 |
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Processing
Software | Name: JACK-LEVITT / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 2.5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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Refinement | *PLUS Highest resolution: 2.5 Å / Num. reflection obs: 8006 / Rfactor obs: 0.21 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |