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Yorodumi- PDB-4bna: REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGA... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4bna | ||||||||||||||||||
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Title | REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / B-DNA / DOUBLE HELIX / MODIFIED | Function / homology | DNA / DNA (> 10) | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 2.3 Å | Authors | Kopka, M.L. / Fratini, A.V. / Dickerson, R.E. | Citation | Journal: J.Biol.Chem. / Year: 1982 Title: Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. Authors: Fratini, A.V. / Kopka, M.L. / Drew, H.R. / Dickerson, R.E. #1: Journal: J.Mol.Biol. / Year: 1983 Title: Ordered Water Structure around a B-DNA Dodecamer. A Quantitative Study Authors: Kopka, M.L. / Fratini, A.V. / Drew, H.R. / Dickerson, R.E. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1982 Title: Structure of a B-DNA Dodecamer at 16 Kelvin Authors: Drew, H.R. / Samson, S. / Dickerson, R.E. #3: Journal: Proc.Natl.Acad.Sci.USA / Year: 1981 Title: Kinematic Model for B-DNA Authors: Dickerson, R.E. / Drew, H.R. #4: Journal: Proc.Natl.Acad.Sci.USA / Year: 1981 Title: Structure of a B-DNA Dodecamer. Conformation and Dynamics Authors: Drew, H.R. / Wing, R.M. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. #5: Journal: J.Mol.Biol. / Year: 1981 Title: Structure of a B-DNA Dodecamer. II. Influence of Base Sequence on Helix Structure Authors: Dickerson, R.E. / Drew, H.R. #6: Journal: J.Mol.Biol. / Year: 1981 Title: Structure of a B-DNA Dodecamer. III. Geometry of Hydration Authors: Drew, H.R. / Dickerson, R.E. #7: Journal: Nature / Year: 1980 Title: Crystal Structure Analysis of a Complete Turn of B-DNA Authors: Wing, R. / Drew, H.R. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4bna.cif.gz | 26.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4bna.ent.gz | 17.3 KB | Display | PDB format |
PDBx/mmJSON format | 4bna.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bn/4bna ftp://data.pdbj.org/pub/pdb/validation_reports/bn/4bna | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 3742.288 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.07 Å3/Da / Density % sol: 40.65 % | |||||||||||||||||||||||||
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Crystal grow | Temperature: 280 K / Method: vapor diffusion / Details: VAPOR DIFFUSION, temperature 280.00K | |||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Temperature: 7 ℃ | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 280 K |
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Detector | Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.3→8 Å / Num. obs: 2919 |
Reflection | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 8 Å / Rmerge(I) obs: 0.59 |
-Processing
Software | Name: JACK-LEVITT / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.3→8 Å /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.3→8 Å
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Refinement | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 7 Å / Rfactor obs: 0.215 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |