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- PDB-7bna: ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7bna | ||||||||||||||||||
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Title | ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX | Function / homology | DNA / DNA (> 10) | ![]() Method | ![]() ![]() Holbrook, S.R. / Dickerson, R.E. / Kim, S.-H. | ![]() Journal: Acta Crystallogr.,Sect.B / Year: 1985 Title: Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer CGCGAATTCGCG by the Segmented Rigid-Body Method Authors: Holbrook, S.R. / Dickerson, R.E. / Kim, S.-H. #1: ![]() Title: Local Mobility of Nucleic Acids as Determined from Crystallographic Data. I. RNA and B Form DNA Authors: Holbrook, S.R. / Kim, S.-H. #2: ![]() Title: Crystal Structure Analysis of a Complete Turn of B-DNA Authors: Wing, R. / Drew, H.R. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 37.6 KB | Display | ![]() |
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PDB format | ![]() | 26.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 364.5 KB | Display | ![]() |
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Full document | ![]() | 377.2 KB | Display | |
Data in XML | ![]() | 5.1 KB | Display | |
Data in CIF | ![]() | 6.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 3663.392 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.27 Å3/Da / Density % sol: 45.79 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 290 K / Method: vapor diffusion / pH: 7.5 / Details: pH 7.50, VAPOR DIFFUSION, temperature 290.00K | ||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Detector | Detector: DIFFRACTOMETER |
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Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.9 Å / Num. obs: 5691 |
Reflection | *PLUS Highest resolution: 1.9 Å / Rmerge(I) obs: 0.264 |
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Processing
Software | Name: CORELS / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.9→8 Å / σ(F): 2 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.9→8 Å
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Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 8 Å / Num. reflection all: 5599 / σ(F): 2 / Rfactor all: 0.206 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |