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Yorodumi- PDB-2l7h: The solution structure of the HAMP domain of the hypothetical tra... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2l7h | |||||||||
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Title | The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503 | |||||||||
Components | Uncharacterized protein | |||||||||
Keywords | SIGNALING PROTEIN / Complementary x-da | |||||||||
Function / homology | Function and homology information signal transduction / membrane / identical protein binding / metal ion binding Similarity search - Function | |||||||||
Biological species | Archaeoglobus fulgidus (archaea) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Model details | minimized average, model 1 | |||||||||
Authors | Coles, M. / Hulko, M. / Martin, J. / Lupas, A.N. | |||||||||
Citation | Journal: Structure / Year: 2011 Title: The Mechanisms of HAMP-Mediated Signaling in Transmembrane Receptors. Authors: Ferris, H.U. / Dunin-Horkawicz, S. / Mondejar, L.G. / Hulko, M. / Hantke, K. / Martin, J. / Schultz, J.E. / Zeth, K. / Lupas, A.N. / Coles, M. #1: Journal: Cell(Cambridge,Mass.) / Year: 2006 Title: The HAMP domain structure implies helix rotation in transmembrane signaling. Authors: Hulko, M. / Berndt, F. / Gruber, M. / Linder, J.U. / Truffault, V. / Schultz, A. / Martin, J. / Schultz, J.E. / Lupas, A.N. / Coles, M. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2l7h.cif.gz | 634.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2l7h.ent.gz | 540.8 KB | Display | PDB format |
PDBx/mmJSON format | 2l7h.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l7/2l7h ftp://data.pdbj.org/pub/pdb/validation_reports/l7/2l7h | HTTPS FTP |
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-Related structure data
Related structure data | 2l7iC 2y0qC 2y0tC 2y20C 2y21C C: citing same article (ref.) |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6421.323 Da / Num. of mol.: 2 / Fragment: HAMP domain residues 278-331 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Archaeoglobus fulgidus (archaea) / Gene: af1503, AF_1503 / Production host: Escherichia coli (E. coli) / References: UniProt: O28769 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 150 / pH: 7.2 / Pressure: ambient / Temperature: 308 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: Refinement against a conformational database potential | ||||||||||||||||||||||||
NMR constraints | NOE constraints total: 1063 / NOE intraresidue total count: 195 / NOE long range total count: 168 / NOE medium range total count: 352 / NOE sequential total count: 282 / Protein chi angle constraints total count: 70 / Protein other angle constraints total count: 40 / Protein phi angle constraints total count: 106 / Protein psi angle constraints total count: 104 | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 18 / Maximum lower distance constraint violation: 0.08 Å / Maximum torsion angle constraint violation: 0.4 ° / Maximum upper distance constraint violation: 0.09 Å | ||||||||||||||||||||||||
NMR ensemble rms | Distance rms dev: 0.01 Å / Distance rms dev error: 0.0005 Å |