[English] 日本語
Yorodumi- PDB-1pfi: PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL P... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1pfi | ||||||
---|---|---|---|---|---|---|---|
Title | PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL PHOSPHATES | ||||||
Components |
| ||||||
Keywords | VIRUS / COMPLEX(VIRAL COAT PROTEIN-DNA) / Helical virus | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Pseudomonas phage Pf1 (virus) | ||||||
Method | FIBER DIFFRACTION / Resolution: 3 Å | ||||||
Authors | Liu, D.J. / Day, L.A. | ||||||
Citation | Journal: Science / Year: 1994 Title: Pf1 virus structure: helical coat protein and DNA with paraxial phosphates. Authors: Liu, D.J. / Day, L.A. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1pfi.cif.gz | 39.7 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1pfi.ent.gz | 28.8 KB | Display | PDB format |
PDBx/mmJSON format | 1pfi.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1pfi_validation.pdf.gz | 350.5 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1pfi_full_validation.pdf.gz | 376.2 KB | Display | |
Data in XML | 1pfi_validation.xml.gz | 5.2 KB | Display | |
Data in CIF | 1pfi_validation.cif.gz | 7.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pf/1pfi ftp://data.pdbj.org/pub/pdb/validation_reports/pf/1pfi | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| x 35||||||||
2 |
| ||||||||
3 |
| ||||||||
Unit cell |
| ||||||||
Symmetry | Helical symmetry: (Circular symmetry: 1 / Dyad axis: no / N subunits divisor: 1 / Num. of operations: 35 / Rise per n subunits: 6.1 Å / Rotation per n subunits: 131.84 °) |
-Components
#1: Protein/peptide | Mass: 4612.393 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Pseudomonas phage Pf1 (virus) / Genus: Inovirus / Strain: G8P / References: UniProt: P03621 #2: DNA chain | Mass: 307.197 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Pseudomonas phage Pf1 (virus) / Genus: Inovirus / Strain: G8P |
---|
-Experimental details
-Experiment
Experiment | Method: FIBER DIFFRACTION |
---|
-Data collection
Radiation wavelength | Relative weight: 1 |
---|
-Processing
Refinement | Highest resolution: 3 Å Details: DATA ARE BASED ON, BUT NOT LIMITED TO, FIBER DIFFRACTION. | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement step | Cycle: LAST / Highest resolution: 3 Å
|