+Open data
-Basic information
Entry | Database: PDB / ID: 1ncs | ||||||
---|---|---|---|---|---|---|---|
Title | NMR STUDY OF SWI5 ZINC FINGER DOMAIN 1 | ||||||
Components | TRANSCRIPTIONAL FACTOR SWI5 | ||||||
Keywords | TRANSCRIPTION REGULATION / DNA BINDING MOTIF / ZINC-FINGER | ||||||
Function / homology | Function and homology information positive regulation of mating type switching / mediator complex binding / RNA polymerase II transcription regulatory region sequence-specific DNA binding / sequence-specific DNA binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / metal ion binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Dutnall, R.N. / Neuhaus, D. / Rhodes, D. | ||||||
Citation | Journal: Structure / Year: 1996 Title: The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold. Authors: Dutnall, R.N. / Neuhaus, D. / Rhodes, D. #1: Journal: J.Mol.Biol. / Year: 1992 Title: Adjacent Zinc-Finger Motifs in Multiple Zinc-Finger Peptides from Swi5 Form Structurally Independent, Flexibly Linked Domains Authors: Nakaseko, Y. / Neuhaus, D. / Klug, A. / Rhodes, D. #2: Journal: J.Mol.Biol. / Year: 1992 Title: Solution Structures of Two Zinc-Finger Domains from Swi5 Obtained Using Two-Dimensional 1H Nuclear Magnetic Resonance Spectroscopy. A Zinc-Finger Structure with a Third Strand of Beta-Sheet Authors: Neuhaus, D. / Nakaseko, Y. / Schwabe, J.W. / Klug, A. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1ncs.cif.gz | 706.8 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1ncs.ent.gz | 612.2 KB | Display | PDB format |
PDBx/mmJSON format | 1ncs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nc/1ncs ftp://data.pdbj.org/pub/pdb/validation_reports/nc/1ncs | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein/peptide | Mass: 5669.563 Da / Num. of mol.: 1 / Fragment: ZINC FINGER DNA BINDING DOMAIN 1 OF SWI5 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Description: T7 POLYMERASE EXPRESSION SYSTEM / Gene: T7 / Plasmid: PET13A / Gene (production host): T7 / Production host: Escherichia coli (E. coli) / References: UniProt: P08153 |
---|---|
#2: Chemical | ChemComp-ZN / |
Compound details | OTHER_DETAILS: THIS ENTRY REPRESENTS THE STRUCTURE OF THE FIRST ZINC FINGER DOMAIN OF SWI5, WHICH ...OTHER_DETAILS: THIS ENTRY REPRESENTS |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|
-Sample preparation
Crystal grow | *PLUS Method: other |
---|
-Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software | Name: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers submitted total number: 46 |