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Open data
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Basic information
| Entry | Database: PDB / ID: 6vgj | ||||||
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| Title | N-terminal variant of CXCL13 | ||||||
Components | C-X-C motif chemokine 13 | ||||||
Keywords | CYTOKINE / Chemokine / Agonist | ||||||
| Function / homology | Function and homology informationnegative regulation of endothelial cell chemotaxis to fibroblast growth factor / lymphocyte chemotaxis across high endothelial venule / CXCR5 chemokine receptor binding / endothelial cell chemotaxis to fibroblast growth factor / CCR10 chemokine receptor binding / CXCR3 chemokine receptor binding / B cell chemotaxis / regulation of humoral immune response / chronic inflammatory response / regulation of Rap protein signal transduction ...negative regulation of endothelial cell chemotaxis to fibroblast growth factor / lymphocyte chemotaxis across high endothelial venule / CXCR5 chemokine receptor binding / endothelial cell chemotaxis to fibroblast growth factor / CCR10 chemokine receptor binding / CXCR3 chemokine receptor binding / B cell chemotaxis / regulation of humoral immune response / chronic inflammatory response / regulation of Rap protein signal transduction / positive regulation of T cell chemotaxis / CXCR chemokine receptor binding / positive regulation of cell-cell adhesion mediated by integrin / positive regulation of integrin activation / chemokine-mediated signaling pathway / germinal center formation / chemokine activity / Chemokine receptors bind chemokines / fibroblast growth factor binding / regulation of angiogenesis / neutrophil chemotaxis / antimicrobial humoral immune response mediated by antimicrobial peptide / cell-cell signaling / heparin binding / cellular response to lipopolysaccharide / positive regulation of cytosolic calcium ion concentration / G alpha (i) signalling events / cell surface receptor signaling pathway / defense response to bacterium / immune response / receptor ligand activity / inflammatory response / extracellular space / extracellular region Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.52 Å | ||||||
Authors | Rosenberg Jr., E.M. / Lolis, E.J. | ||||||
| Funding support | United States, 1items
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Citation | Journal: Acta Crystallogr D Struct Biol / Year: 2020Title: The N-terminal length and side-chain composition of CXCL13 affect crystallization, structure and functional activity. Authors: Rosenberg Jr., E.M. / Herrington, J. / Rajasekaran, D. / Murphy, J.W. / Pantouris, G. / Lolis, E.J. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6vgj.cif.gz | 319.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6vgj.ent.gz | 267.4 KB | Display | PDB format |
| PDBx/mmJSON format | 6vgj.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6vgj_validation.pdf.gz | 468.6 KB | Display | wwPDB validaton report |
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| Full document | 6vgj_full_validation.pdf.gz | 472.7 KB | Display | |
| Data in XML | 6vgj_validation.xml.gz | 20.9 KB | Display | |
| Data in CIF | 6vgj_validation.cif.gz | 28 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vg/6vgj ftp://data.pdbj.org/pub/pdb/validation_reports/vg/6vgj | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7jnyC ![]() 4zai C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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About Yorodumi




Homo sapiens (human)
X-RAY DIFFRACTION
United States, 1items
Citation









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