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Yorodumi- PDB-1h4y: Structure of the Anti-Sigma Factor Antagonist SpoIIAA in its Unph... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1h4y | ||||||
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Title | Structure of the Anti-Sigma Factor Antagonist SpoIIAA in its Unphosphorylated Form | ||||||
Components | ANTI-SIGMA F FACTOR ANTAGONIST | ||||||
Keywords | CELL DIFFERENTIATION / PHOSPHORYLATION / SIGMA FACTORS / SPORULATION | ||||||
Function / homology | Function and homology information anti-sigma factor antagonist activity / antisigma factor binding / sporulation resulting in formation of a cellular spore Similarity search - Function | ||||||
Biological species | BACILLUS SPHAERICUS (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 1.61 Å | ||||||
Authors | Seavers, P.R. / Lewis, R.J. / Brannigan, J.A. / Verschueren, K.H.G. / Murshudov, G.N. / Wilkinson, A.J. | ||||||
Citation | Journal: Structure / Year: 2001 Title: Structure of the Bacillus Cell Fate Determinant Spoiiaa in Phosphorylated and Unphosphorylated Forms Authors: Seavers, P.R. / Lewis, R.J. / Brannigan, J.A. / Verschueren, K.H.G. / Murshudov, G.N. / Wilkinson, A.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1h4y.cif.gz | 103.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1h4y.ent.gz | 83.5 KB | Display | PDB format |
PDBx/mmJSON format | 1h4y.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/h4/1h4y ftp://data.pdbj.org/pub/pdb/validation_reports/h4/1h4y | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 13093.158 Da / Num. of mol.: 2 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) BACILLUS SPHAERICUS (bacteria) / Strain: ATCC14577 / Plasmid: PET28A / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): B834 / References: UniProt: O32723*PLUS #2: Water | ChemComp-HOH / | Compound details | CHAIN A, B ENGINEERED | Sequence details | THE SEQUENCE SPOIIA FROM BACILLUS SPHAERICUSS STRAIN ATCC14577, IS SIMILAR TO THE SWISSPROT ENTRY ...THE SEQUENCE SPOIIA FROM BACILLUS SPHAERICUS | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.9 Å3/Da / Density % sol: 35.41 % Description: ABOVE DATA IS THE NATIVE DATA TO 1.61A. THE STRUCTURE WAS ORIGINALLY SOLVED BY MAD TO 2.5A. | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 8.5 / Details: 15% PEG 4K, 200MM MGCL2, 0.1M TRIS (PH 8.5) | ||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 291 K / Method: vapor diffusion, hanging drop / Details: Seavers, P.R., (2001) Acta Crystallogr., D57, 292. | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-2 / Wavelength: 0.93 |
Detector | Type: MARRESEARCH / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.93 Å / Relative weight: 1 |
Reflection | Resolution: 1.61→19.9 Å / Num. obs: 25927 / % possible obs: 96.4 % / Redundancy: 4.57 % / Rmerge(I) obs: 0.076 / Net I/σ(I): 19.8 |
Reflection shell | Resolution: 1.61→1.67 Å / Rmerge(I) obs: 0.24 / Mean I/σ(I) obs: 5.4 / % possible all: 87.1 |
Reflection | *PLUS Num. measured all: 118510 |
Reflection shell | *PLUS % possible obs: 87.1 % |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 1.61→20 Å / SU B: 4.912 / SU ML: 0.091 / Cross valid method: THROUGHOUT / ESU R Free: 0.1 / Details: NONE
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Refinement step | Cycle: LAST / Resolution: 1.61→20 Å
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.159 | ||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||
Refine LS restraints | *PLUS
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